Variant report

Variant	rs6571465
Chromosome Location	chr14:32251341-32251342
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:32250042..32252755-chr14:32254053..32255704,2	MCF-7	breast:

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10047861	1.00[EUR][1000 genomes]
rs10132862	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10137974	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10139914	0.85[EUR][1000 genomes]
rs10142679	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10143144	0.93[EUR][1000 genomes]
rs10148038	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10149668	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10150831	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10151156	1.00[EUR][1000 genomes]
rs11846852	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11847014	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11847815	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11848462	1.00[EUR][1000 genomes]
rs11850880	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12894985	1.00[EUR][1000 genomes]
rs13379320	1.00[EUR][1000 genomes]
rs1430424	1.00[EUR][1000 genomes]
rs17098168	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17098171	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1982013	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1982014	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2115957	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2120135	1.00[EUR][1000 genomes]
rs2120137	0.87[EUR][1000 genomes]
rs2120138	0.93[EUR][1000 genomes]
rs2163302	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2378899	1.00[EUR][1000 genomes]
rs2378900	1.00[EUR][1000 genomes]
rs2378934	1.00[EUR][1000 genomes]
rs28446445	1.00[EUR][1000 genomes]
rs28532719	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28580449	0.93[EUR][1000 genomes]
rs28806946	1.00[EUR][1000 genomes]
rs28862034	1.00[EUR][1000 genomes]
rs28864375	0.93[EUR][1000 genomes]
rs55674235	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs58097888	1.00[EUR][1000 genomes]
rs58213271	0.93[EUR][1000 genomes]
rs58280106	0.93[EUR][1000 genomes]
rs58900150	1.00[EUR][1000 genomes]
rs59002501	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59679301	1.00[EUR][1000 genomes]
rs60654485	0.93[EUR][1000 genomes]
rs6571449	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6571455	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6571456	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6571460	0.80[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs6571466	1.00[EUR][1000 genomes]
rs6571467	1.00[EUR][1000 genomes]
rs7140277	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7141267	1.00[EUR][1000 genomes]
rs7141477	1.00[EUR][1000 genomes]
rs7141722	1.00[EUR][1000 genomes]
rs7143532	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7144178	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7145785	1.00[EUR][1000 genomes]
rs7147779	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7148248	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7150042	1.00[EUR][1000 genomes]
rs7150488	1.00[EUR][1000 genomes]
rs7150851	1.00[EUR][1000 genomes]
rs7151198	1.00[EUR][1000 genomes]
rs7153885	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7154277	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7156676	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7156907	1.00[EUR][1000 genomes]
rs7158443	1.00[EUR][1000 genomes]
rs7158652	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7159193	1.00[EUR][1000 genomes]
rs7159319	0.93[EUR][1000 genomes]
rs7161592	0.93[EUR][1000 genomes]
rs7161628	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73253213	1.00[EUR][1000 genomes]
rs73255199	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74043606	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8003033	1.00[EUR][1000 genomes]
rs8004616	0.93[EUR][1000 genomes]
rs8005763	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8005857	0.82[EUR][1000 genomes]
rs8009012	1.00[EUR][1000 genomes]
rs8010697	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8015179	1.00[EUR][1000 genomes]
rs8015245	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8015640	1.00[EUR][1000 genomes]
rs8018137	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8020874	1.00[EUR][1000 genomes]
rs8021182	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8022324	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs970488	0.92[AFR][1000 genomes]
rs970489	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9743593	1.00[EUR][1000 genomes]
rs9743878	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934206	chr14:31887749-32257097	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv564180	chr14:31958566-32368934	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv564181	chr14:31958761-32363980	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv901592	chr14:32093548-32267323	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv564182	chr14:32110519-32584337	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv1046526	chr14:32110537-32567426	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv524652	chr14:32241873-32267323	Weak transcription ZNF genes & repeats Enhancers Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv521631	chr14:32242747-32267323	Weak transcription Enhancers ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32222600-32270200	Weak transcription	Aorta	Aorta
2	chr14:32239600-32259800	Weak transcription	Left Ventricle	heart
3	chr14:32244400-32270200	Weak transcription	Ovary	ovary
4	chr14:32250200-32251400	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr14:32250600-32322400	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr14:32250800-32270200	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr14:32251200-32272600	Weak transcription	Primary T cells from cord blood	blood

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