Variant report

Variant	rs970488
Chromosome Location	chr14:32250086-32250087
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:32250042..32252755-chr14:32254053..32255704,2	MCF-7	breast:

Extended variants
information (count: 118 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs10132352	1.00[ASN][1000 genomes]
rs10132862	0.81[AFR][1000 genomes]
rs10133717	1.00[ASN][1000 genomes]
rs10133942	1.00[ASN][1000 genomes]
rs10137974	0.91[AFR][1000 genomes]
rs10142679	0.87[AFR][1000 genomes]
rs10148038	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs10150831	0.85[YRI][hapmap];0.93[AFR][1000 genomes]
rs11156708	1.00[ASN][1000 genomes]
rs11156720	1.00[ASN][1000 genomes]
rs11621039	1.00[ASN][1000 genomes]
rs11621248	1.00[ASN][1000 genomes]
rs11621390	1.00[ASN][1000 genomes]
rs11621521	1.00[ASN][1000 genomes]
rs11621686	1.00[ASN][1000 genomes]
rs11622367	1.00[ASN][1000 genomes]
rs11622373	1.00[ASN][1000 genomes]
rs11624141	1.00[ASN][1000 genomes]
rs11624290	1.00[ASN][1000 genomes]
rs11624768	1.00[ASN][1000 genomes]
rs11624788	1.00[ASN][1000 genomes]
rs11626536	1.00[ASN][1000 genomes]
rs11627538	1.00[ASN][1000 genomes]
rs11628274	1.00[ASN][1000 genomes]
rs11846852	0.92[YRI][hapmap];0.87[AFR][1000 genomes]
rs11847014	0.81[AFR][1000 genomes]
rs11847815	0.86[AFR][1000 genomes]
rs11848123	1.00[CEU][hapmap];0.88[YRI][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11848353	1.00[ASN][1000 genomes]
rs11848392	1.00[ASN][1000 genomes]
rs11850880	0.86[AFR][1000 genomes]
rs12185052	1.00[ASN][1000 genomes]
rs17098168	0.92[YRI][hapmap];0.95[AFR][1000 genomes]
rs17098171	0.80[AFR][1000 genomes]
rs17098218	1.00[ASN][1000 genomes]
rs17098247	1.00[ASN][1000 genomes]
rs17098251	1.00[ASN][1000 genomes]
rs17379796	1.00[ASN][1000 genomes]
rs17379852	1.00[ASN][1000 genomes]
rs17379887	1.00[ASN][1000 genomes]
rs17381661	1.00[ASN][1000 genomes]
rs17464629	1.00[ASN][1000 genomes]
rs17464712	1.00[ASN][1000 genomes]
rs17464726	1.00[ASN][1000 genomes]
rs1953269	1.00[ASN][1000 genomes]
rs1953274	1.00[ASN][1000 genomes]
rs1982013	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs1982014	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs2115957	0.87[AFR][1000 genomes]
rs2378934	0.83[YRI][hapmap]
rs28494034	1.00[ASN][1000 genomes]
rs28532719	0.83[AFR][1000 genomes]
rs28637268	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34753663	1.00[ASN][1000 genomes]
rs3993	1.00[ASN][1000 genomes]
rs4525402	1.00[ASN][1000 genomes]
rs4525403	1.00[ASN][1000 genomes]
rs55674235	0.82[AFR][1000 genomes]
rs55835620	1.00[ASN][1000 genomes]
rs58503445	1.00[ASN][1000 genomes]
rs58675313	1.00[ASN][1000 genomes]
rs59002501	0.93[AFR][1000 genomes]
rs59776229	1.00[ASN][1000 genomes]
rs6571449	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs6571455	0.81[YRI][hapmap];0.82[AFR][1000 genomes]
rs6571456	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs6571465	0.92[AFR][1000 genomes]
rs7140146	0.84[YRI][hapmap]
rs7140277	0.84[YRI][hapmap];0.86[AFR][1000 genomes]
rs7140603	0.84[YRI][hapmap]
rs7143532	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs7144178	0.85[AFR][1000 genomes]
rs7147907	1.00[ASN][1000 genomes]
rs7148175	1.00[ASN][1000 genomes]
rs7148196	1.00[ASN][1000 genomes]
rs7148222	1.00[ASN][1000 genomes]
rs7148248	0.86[AFR][1000 genomes]
rs7148561	1.00[ASN][1000 genomes]
rs7153389	1.00[ASN][1000 genomes]
rs7153738	1.00[ASN][1000 genomes]
rs7153885	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs7154277	0.86[AFR][1000 genomes]
rs7156676	0.81[AFR][1000 genomes]
rs7158652	0.81[AFR][1000 genomes]
rs7161628	0.84[YRI][hapmap];0.92[AFR][1000 genomes]
rs73253276	1.00[ASN][1000 genomes]
rs73255125	1.00[ASN][1000 genomes]
rs73255184	1.00[ASN][1000 genomes]
rs73255188	1.00[ASN][1000 genomes]
rs73255199	0.92[AFR][1000 genomes]
rs73259069	1.00[ASN][1000 genomes]
rs73259070	1.00[ASN][1000 genomes]
rs74041532	1.00[ASN][1000 genomes]
rs74041533	1.00[ASN][1000 genomes]
rs74043606	0.82[AFR][1000 genomes]
rs8004536	1.00[ASN][1000 genomes]
rs8004616	1.00[YRI][hapmap]
rs8004792	1.00[ASN][1000 genomes]
rs8005547	1.00[ASN][1000 genomes]
rs8005763	0.91[YRI][hapmap];0.92[AFR][1000 genomes]
rs8006327	1.00[ASN][1000 genomes]
rs8009002	1.00[ASN][1000 genomes]
rs8009753	1.00[ASN][1000 genomes]
rs8016264	1.00[ASN][1000 genomes]
rs8016527	1.00[ASN][1000 genomes]
rs8018137	0.87[AFR][1000 genomes]
rs8020792	1.00[ASN][1000 genomes]
rs8021182	0.81[YRI][hapmap];0.86[AFR][1000 genomes]
rs8022324	0.85[AFR][1000 genomes]
rs970489	0.92[YRI][hapmap];0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934206	chr14:31887749-32257097	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv564180	chr14:31958566-32368934	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv564181	chr14:31958761-32363980	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv901592	chr14:32093548-32267323	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv564182	chr14:32110519-32584337	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv1046526	chr14:32110537-32567426	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv524652	chr14:32241873-32267323	Weak transcription ZNF genes & repeats Enhancers Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv521631	chr14:32242747-32267323	Weak transcription Enhancers ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32222600-32270200	Weak transcription	Aorta	Aorta
2	chr14:32239600-32259800	Weak transcription	Left Ventricle	heart
3	chr14:32242800-32250200	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr14:32244400-32270200	Weak transcription	Ovary	ovary
5	chr14:32249600-32250200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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