Variant report

Variant	rs1953274
Chromosome Location	chr14:32369101-32369102
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10132352	1.00[ASN][1000 genomes]
rs10133717	1.00[ASN][1000 genomes]
rs10133942	1.00[ASN][1000 genomes]
rs11156708	1.00[ASN][1000 genomes]
rs11156720	1.00[ASN][1000 genomes]
rs11621039	1.00[ASN][1000 genomes]
rs11621248	1.00[ASN][1000 genomes]
rs11621521	1.00[ASN][1000 genomes]
rs11621686	1.00[ASN][1000 genomes]
rs11622367	1.00[ASN][1000 genomes]
rs11622373	1.00[ASN][1000 genomes]
rs11624141	1.00[ASN][1000 genomes]
rs11624768	1.00[ASN][1000 genomes]
rs11624788	1.00[ASN][1000 genomes]
rs11626536	1.00[ASN][1000 genomes]
rs11627538	1.00[ASN][1000 genomes]
rs11628274	1.00[ASN][1000 genomes]
rs11848123	1.00[ASN][1000 genomes]
rs11848353	1.00[ASN][1000 genomes]
rs11848392	1.00[ASN][1000 genomes]
rs12185052	1.00[ASN][1000 genomes]
rs17098218	0.84[CEU][hapmap];1.00[ASN][1000 genomes]
rs17098247	1.00[ASN][1000 genomes]
rs17098251	1.00[ASN][1000 genomes]
rs17379796	0.92[CEU][hapmap];1.00[ASN][1000 genomes]
rs17379852	0.92[CEU][hapmap];1.00[ASN][1000 genomes]
rs17379887	0.92[CEU][hapmap];1.00[ASN][1000 genomes]
rs17381661	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17464629	0.92[CEU][hapmap];1.00[ASN][1000 genomes]
rs17464712	0.92[CEU][hapmap];1.00[ASN][1000 genomes]
rs17464726	0.92[CEU][hapmap];1.00[ASN][1000 genomes]
rs1953269	0.92[CEU][hapmap];1.00[ASN][1000 genomes]
rs28494034	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34753663	1.00[ASN][1000 genomes]
rs3993	1.00[ASN][1000 genomes]
rs4525402	1.00[ASN][1000 genomes]
rs4525403	1.00[ASN][1000 genomes]
rs55835620	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58503445	1.00[ASN][1000 genomes]
rs58675313	1.00[ASN][1000 genomes]
rs59776229	1.00[ASN][1000 genomes]
rs6571472	0.83[CEU][hapmap]
rs7147907	1.00[ASN][1000 genomes]
rs7148175	1.00[ASN][1000 genomes]
rs7148196	1.00[ASN][1000 genomes]
rs7148222	1.00[ASN][1000 genomes]
rs7148561	1.00[ASN][1000 genomes]
rs7153389	1.00[ASN][1000 genomes]
rs7153738	1.00[ASN][1000 genomes]
rs73255125	1.00[ASN][1000 genomes]
rs73255184	1.00[ASN][1000 genomes]
rs73255188	1.00[ASN][1000 genomes]
rs73259069	1.00[ASN][1000 genomes]
rs73259070	1.00[ASN][1000 genomes]
rs74041532	1.00[ASN][1000 genomes]
rs74041533	1.00[ASN][1000 genomes]
rs8004536	1.00[ASN][1000 genomes]
rs8004792	1.00[ASN][1000 genomes]
rs8005547	1.00[ASN][1000 genomes]
rs8006327	1.00[ASN][1000 genomes]
rs8009002	1.00[ASN][1000 genomes]
rs8009753	1.00[ASN][1000 genomes]
rs8016264	0.92[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8016527	0.83[CEU][hapmap];1.00[ASN][1000 genomes]
rs8020792	1.00[ASN][1000 genomes]
rs970488	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564182	chr14:32110519-32584337	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1046526	chr14:32110537-32567426	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv526200	chr14:32308511-32454372	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv519917	chr14:32363980-32375359	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2760330	chr14:32364547-32377760	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1040337	chr14:32364547-32387656	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32364200-32371200	Weak transcription	Placenta	Placenta
2	chr14:32364400-32371000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr14:32364800-32370400	Weak transcription	K562	blood
4	chr14:32364800-32371000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr14:32365200-32370800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr14:32365200-32370800	Weak transcription	NHEK	skin
7	chr14:32367200-32370000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr14:32367200-32370200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr14:32367200-32370800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr14:32367200-32376200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr14:32368400-32370400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr14:32368600-32370800	Weak transcription	HMEC	breast

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