Variant report
| Variant | rs74041532 |
|---|---|
| Chromosome Location | chr14:32382468-32382469 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:65)
| rs_ID | r2[population] |
|---|---|
| rs10132352 | 1.00[ASN][1000 genomes] |
| rs10133717 | 1.00[ASN][1000 genomes] |
| rs10133942 | 1.00[ASN][1000 genomes] |
| rs11156708 | 1.00[ASN][1000 genomes] |
| rs11156720 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11621039 | 1.00[ASN][1000 genomes] |
| rs11621248 | 1.00[ASN][1000 genomes] |
| rs11621521 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11621686 | 1.00[ASN][1000 genomes] |
| rs11622367 | 1.00[ASN][1000 genomes] |
| rs11622373 | 1.00[ASN][1000 genomes] |
| rs11624768 | 1.00[ASN][1000 genomes] |
| rs11624788 | 1.00[ASN][1000 genomes] |
| rs11625857 | 0.87[EUR][1000 genomes] |
| rs11626536 | 1.00[ASN][1000 genomes] |
| rs11627538 | 1.00[ASN][1000 genomes] |
| rs11628274 | 1.00[ASN][1000 genomes] |
| rs11848123 | 1.00[ASN][1000 genomes] |
| rs11848353 | 1.00[ASN][1000 genomes] |
| rs11848392 | 1.00[ASN][1000 genomes] |
| rs12185052 | 1.00[ASN][1000 genomes] |
| rs12437217 | 0.92[EUR][1000 genomes] |
| rs17098218 | 1.00[ASN][1000 genomes] |
| rs17098247 | 1.00[ASN][1000 genomes] |
| rs17098251 | 1.00[ASN][1000 genomes] |
| rs17379796 | 1.00[ASN][1000 genomes] |
| rs17379852 | 1.00[ASN][1000 genomes] |
| rs17379887 | 1.00[ASN][1000 genomes] |
| rs17381661 | 1.00[ASN][1000 genomes] |
| rs17464629 | 1.00[ASN][1000 genomes] |
| rs17464712 | 1.00[ASN][1000 genomes] |
| rs17464726 | 1.00[ASN][1000 genomes] |
| rs1953269 | 1.00[ASN][1000 genomes] |
| rs1953274 | 1.00[ASN][1000 genomes] |
| rs28494034 | 1.00[ASN][1000 genomes] |
| rs34753663 | 1.00[ASN][1000 genomes] |
| rs3993 | 1.00[ASN][1000 genomes] |
| rs4525402 | 1.00[ASN][1000 genomes] |
| rs4525403 | 1.00[ASN][1000 genomes] |
| rs55835620 | 1.00[ASN][1000 genomes] |
| rs58503445 | 1.00[ASN][1000 genomes] |
| rs58675313 | 1.00[ASN][1000 genomes] |
| rs59776229 | 1.00[ASN][1000 genomes] |
| rs7147907 | 1.00[ASN][1000 genomes] |
| rs7148175 | 1.00[ASN][1000 genomes] |
| rs7148196 | 1.00[ASN][1000 genomes] |
| rs7148222 | 1.00[ASN][1000 genomes] |
| rs7148561 | 1.00[ASN][1000 genomes] |
| rs7153389 | 1.00[ASN][1000 genomes] |
| rs7153738 | 1.00[ASN][1000 genomes] |
| rs73255184 | 1.00[ASN][1000 genomes] |
| rs73255188 | 1.00[ASN][1000 genomes] |
| rs73259069 | 1.00[ASN][1000 genomes] |
| rs73259070 | 1.00[ASN][1000 genomes] |
| rs74041533 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8004536 | 1.00[ASN][1000 genomes] |
| rs8004792 | 1.00[ASN][1000 genomes] |
| rs8005547 | 1.00[ASN][1000 genomes] |
| rs8006327 | 1.00[ASN][1000 genomes] |
| rs8009002 | 1.00[ASN][1000 genomes] |
| rs8009753 | 1.00[ASN][1000 genomes] |
| rs8016264 | 1.00[ASN][1000 genomes] |
| rs8016527 | 1.00[ASN][1000 genomes] |
| rs8020792 | 1.00[ASN][1000 genomes] |
| rs970488 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv564182 | chr14:32110519-32584337 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 12 gene(s) | inside rSNPs | diseases |
| 2 | nsv1046526 | chr14:32110537-32567426 | Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 12 gene(s) | inside rSNPs | diseases |
| 3 | nsv526200 | chr14:32308511-32454372 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv1040337 | chr14:32364547-32387656 | Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:32382200-32382800 | ZNF genes & repeats | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
