Variant report

Variant	rs4525402
Chromosome Location	chr14:32252339-32252340
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:32250042..32252755-chr14:32254053..32255704,2	MCF-7	breast:

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10132352	1.00[ASN][1000 genomes]
rs10133717	1.00[ASN][1000 genomes]
rs10133942	1.00[ASN][1000 genomes]
rs11156708	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11156720	1.00[ASN][1000 genomes]
rs11621039	1.00[CEU][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11621112	0.90[AMR][1000 genomes]
rs11621248	1.00[ASN][1000 genomes]
rs11621390	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11621521	1.00[ASN][1000 genomes]
rs11621686	1.00[ASN][1000 genomes]
rs11622367	1.00[ASN][1000 genomes]
rs11622373	1.00[ASN][1000 genomes]
rs11624141	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11624210	1.00[CEU][hapmap]
rs11624290	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11624768	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11624788	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11626536	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11627538	1.00[CEU][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11628225	0.90[AMR][1000 genomes]
rs11628274	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11848123	1.00[ASN][1000 genomes]
rs11848353	1.00[ASN][1000 genomes]
rs11848392	1.00[ASN][1000 genomes]
rs12185052	1.00[CEU][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1430426	1.00[CEU][hapmap]
rs17098218	1.00[ASN][1000 genomes]
rs17098247	1.00[ASN][1000 genomes]
rs17098251	1.00[ASN][1000 genomes]
rs17379796	1.00[ASN][1000 genomes]
rs17379852	1.00[ASN][1000 genomes]
rs17379887	1.00[ASN][1000 genomes]
rs17381661	1.00[ASN][1000 genomes]
rs17464629	1.00[ASN][1000 genomes]
rs17464712	1.00[ASN][1000 genomes]
rs17464726	1.00[ASN][1000 genomes]
rs1953269	1.00[ASN][1000 genomes]
rs1953274	1.00[ASN][1000 genomes]
rs2378898	0.90[AMR][1000 genomes]
rs28494034	1.00[ASN][1000 genomes]
rs34753663	1.00[ASN][1000 genomes]
rs3993	1.00[ASN][1000 genomes]
rs4525403	1.00[CEU][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55835620	1.00[ASN][1000 genomes]
rs58503445	1.00[ASN][1000 genomes]
rs58675313	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59776229	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7147907	1.00[ASN][1000 genomes]
rs7148175	1.00[ASN][1000 genomes]
rs7148196	1.00[ASN][1000 genomes]
rs7148222	1.00[ASN][1000 genomes]
rs7148561	1.00[ASN][1000 genomes]
rs7153389	1.00[ASN][1000 genomes]
rs7153738	1.00[ASN][1000 genomes]
rs73253276	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73255125	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73255184	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73255188	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73259069	1.00[ASN][1000 genomes]
rs73259070	1.00[ASN][1000 genomes]
rs74041532	1.00[ASN][1000 genomes]
rs74041533	1.00[ASN][1000 genomes]
rs8004536	1.00[ASN][1000 genomes]
rs8004792	1.00[ASN][1000 genomes]
rs8005547	1.00[ASN][1000 genomes]
rs8006327	1.00[ASN][1000 genomes]
rs8009002	1.00[ASN][1000 genomes]
rs8009753	1.00[ASN][1000 genomes]
rs8016264	1.00[ASN][1000 genomes]
rs8016527	1.00[ASN][1000 genomes]
rs8020792	1.00[ASN][1000 genomes]
rs970488	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934206	chr14:31887749-32257097	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv564180	chr14:31958566-32368934	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv564181	chr14:31958761-32363980	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv901592	chr14:32093548-32267323	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv564182	chr14:32110519-32584337	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv1046526	chr14:32110537-32567426	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv524652	chr14:32241873-32267323	Weak transcription ZNF genes & repeats Enhancers Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv521631	chr14:32242747-32267323	Weak transcription Enhancers ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32222600-32270200	Weak transcription	Aorta	Aorta
2	chr14:32239600-32259800	Weak transcription	Left Ventricle	heart
3	chr14:32244400-32270200	Weak transcription	Ovary	ovary
4	chr14:32250600-32322400	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr14:32250800-32270200	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr14:32251200-32272600	Weak transcription	Primary T cells from cord blood	blood
7	chr14:32251400-32261400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr14:32252000-32252600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr14:32252200-32261200	Weak transcription	Primary B cells from cord blood	blood

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