Variant report

Variant	rs17381661
Chromosome Location	chr14:32362859-32362860
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10132352	1.00[ASN][1000 genomes]
rs10133717	1.00[ASN][1000 genomes]
rs10133942	1.00[ASN][1000 genomes]
rs11156708	1.00[ASN][1000 genomes]
rs11156720	1.00[ASN][1000 genomes]
rs11621039	1.00[ASN][1000 genomes]
rs11621248	1.00[ASN][1000 genomes]
rs11621390	1.00[ASN][1000 genomes]
rs11621521	1.00[ASN][1000 genomes]
rs11621686	1.00[ASN][1000 genomes]
rs11622367	1.00[ASN][1000 genomes]
rs11622373	1.00[ASN][1000 genomes]
rs11624141	1.00[ASN][1000 genomes]
rs11624768	1.00[ASN][1000 genomes]
rs11624788	1.00[ASN][1000 genomes]
rs11626536	1.00[ASN][1000 genomes]
rs11627538	1.00[ASN][1000 genomes]
rs11628274	1.00[ASN][1000 genomes]
rs11848123	1.00[ASN][1000 genomes]
rs11848353	1.00[ASN][1000 genomes]
rs11848392	1.00[ASN][1000 genomes]
rs12185052	1.00[ASN][1000 genomes]
rs17098218	0.91[CEU][hapmap];1.00[ASN][1000 genomes]
rs17098247	1.00[ASN][1000 genomes]
rs17098251	1.00[ASN][1000 genomes]
rs17098275	0.95[GIH][hapmap]
rs17379796	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs17379852	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs17379887	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs17464234	0.88[CEU][hapmap]
rs17464629	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs17464712	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs17464726	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs1953269	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs1953274	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28494034	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34753663	1.00[ASN][1000 genomes]
rs3993	1.00[ASN][1000 genomes]
rs4525402	1.00[ASN][1000 genomes]
rs4525403	1.00[ASN][1000 genomes]
rs55835620	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58503445	1.00[ASN][1000 genomes]
rs58675313	1.00[ASN][1000 genomes]
rs59776229	1.00[ASN][1000 genomes]
rs7147907	1.00[ASN][1000 genomes]
rs7148175	1.00[ASN][1000 genomes]
rs7148196	1.00[ASN][1000 genomes]
rs7148222	1.00[ASN][1000 genomes]
rs7148561	1.00[ASN][1000 genomes]
rs7153389	1.00[ASN][1000 genomes]
rs7153738	1.00[ASN][1000 genomes]
rs73255125	1.00[ASN][1000 genomes]
rs73255184	1.00[ASN][1000 genomes]
rs73255188	1.00[ASN][1000 genomes]
rs73259069	1.00[ASN][1000 genomes]
rs73259070	1.00[ASN][1000 genomes]
rs74041532	1.00[ASN][1000 genomes]
rs74041533	1.00[ASN][1000 genomes]
rs8004536	1.00[ASN][1000 genomes]
rs8004792	1.00[ASN][1000 genomes]
rs8005547	1.00[ASN][1000 genomes]
rs8006327	1.00[ASN][1000 genomes]
rs8009002	1.00[ASN][1000 genomes]
rs8009753	1.00[ASN][1000 genomes]
rs8016264	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8016527	0.91[CEU][hapmap];0.81[GIH][hapmap];1.00[ASN][1000 genomes]
rs8020792	1.00[ASN][1000 genomes]
rs970488	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564180	chr14:31958566-32368934	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv564181	chr14:31958761-32363980	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv564182	chr14:32110519-32584337	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv1046526	chr14:32110537-32567426	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv526200	chr14:32308511-32454372	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32354400-32364600	Weak transcription	HSMM	muscle
2	chr14:32358800-32366600	Weak transcription	Fetal Brain Female	brain
3	chr14:32360600-32365000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr14:32360600-32365200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:32360800-32365200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr14:32361000-32365200	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr14:32361200-32363400	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr14:32361200-32363400	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr14:32361200-32364800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr14:32361400-32363000	Enhancers	H1 Cell Line	embryonic stem cell
11	chr14:32361400-32363200	Enhancers	Left Ventricle	heart
12	chr14:32361400-32363200	Enhancers	Right Atrium	heart
13	chr14:32361400-32363200	Enhancers	K562	blood
14	chr14:32361400-32365200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr14:32361600-32363200	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr14:32361600-32363200	Enhancers	Brain Germinal Matrix	brain
17	chr14:32361600-32363200	Enhancers	HUVEC	blood vessel
18	chr14:32361600-32363600	Enhancers	Brain Anterior Caudate	brain
19	chr14:32362000-32363000	Enhancers	Primary hematopoietic stem cells	blood
20	chr14:32362000-32363400	Enhancers	Right Ventricle	heart
21	chr14:32362000-32364000	Enhancers	Adipose Nuclei	Adipose
22	chr14:32362000-32365200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr14:32362200-32363200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr14:32362200-32363800	Enhancers	Fetal Heart	heart
25	chr14:32362200-32365200	Enhancers	Stomach Mucosa	stomach
26	chr14:32362400-32363000	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr14:32362400-32363000	Enhancers	H9 Cell Line	embryonic stem cell
28	chr14:32362400-32363000	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr14:32362400-32363200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr14:32362400-32363200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr14:32362400-32363200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr14:32362400-32363200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr14:32362400-32363200	Enhancers	Pancreas	Pancrea
34	chr14:32362400-32363400	Bivalent Enhancer	HepG2	liver
35	chr14:32362400-32363400	Enhancers	NH-A	brain
36	chr14:32362400-32363800	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr14:32362400-32364000	Enhancers	Fetal Muscle Leg	muscle
38	chr14:32362400-32364200	Enhancers	Lung	lung
39	chr14:32362400-32364200	Enhancers	NHEK	skin
40	chr14:32362400-32364800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chr14:32362400-32365000	Enhancers	Brain Cingulate Gyrus	brain
42	chr14:32362400-32365200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr14:32362400-32365200	Enhancers	Brain Hippocampus Middle	brain
44	chr14:32362400-32365200	Enhancers	HMEC	breast
45	chr14:32362600-32363000	Enhancers	iPS-20b Cell Line	embryonic stem cell
46	chr14:32362600-32363000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr14:32362600-32363000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
48	chr14:32362600-32363000	Enhancers	Brain Substantia Nigra	brain
49	chr14:32362600-32363000	Enhancers	Fetal Lung	lung
50	chr14:32362600-32363200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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