Variant report

Variant	rs7140603
Chromosome Location	chr14:32105461-32105462
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10143144	1.00[CEU][hapmap]
rs10148038	1.00[CEU][hapmap];0.83[YRI][hapmap]
rs10149668	1.00[CEU][hapmap]
rs10150831	1.00[CEU][hapmap]
rs10151156	1.00[CEU][hapmap]
rs11846852	0.92[YRI][hapmap]
rs1430424	1.00[CEU][hapmap]
rs17098019	1.00[CEU][hapmap];0.80[YRI][hapmap]
rs17098168	1.00[CEU][hapmap];0.92[YRI][hapmap]
rs17098171	1.00[CEU][hapmap]
rs17098197	1.00[CEU][hapmap]
rs1982013	1.00[CEU][hapmap];0.84[YRI][hapmap]
rs1982014	1.00[CEU][hapmap];0.91[YRI][hapmap]
rs2378899	1.00[CEU][hapmap]
rs2378934	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs6571449	1.00[CEU][hapmap];0.84[YRI][hapmap]
rs6571455	0.81[YRI][hapmap]
rs6571456	1.00[CEU][hapmap];0.91[YRI][hapmap]
rs6571466	1.00[CEU][hapmap]
rs6571467	1.00[CEU][hapmap]
rs7140146	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs7140277	1.00[CEU][hapmap];0.84[YRI][hapmap]
rs7141477	1.00[CEU][hapmap]
rs7143532	1.00[CEU][hapmap];0.83[YRI][hapmap]
rs7144178	1.00[CEU][hapmap]
rs7151198	1.00[CEU][hapmap]
rs7153885	1.00[CEU][hapmap];0.84[YRI][hapmap]
rs7156907	1.00[CEU][hapmap]
rs7159193	1.00[CEU][hapmap]
rs7161628	1.00[CEU][hapmap];0.84[YRI][hapmap]
rs8004616	1.00[CEU][hapmap];0.91[YRI][hapmap]
rs8005763	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs8009012	1.00[CEU][hapmap]
rs8018137	1.00[CEU][hapmap]
rs8020874	1.00[CEU][hapmap]
rs8021182	1.00[CEU][hapmap];0.91[YRI][hapmap]
rs970488	0.84[YRI][hapmap]
rs970489	1.00[CEU][hapmap];0.92[YRI][hapmap]
rs9743878	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931935	chr14:31871658-32117666	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv934110	chr14:31887749-32109529	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv934206	chr14:31887749-32257097	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv564180	chr14:31958566-32368934	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv564181	chr14:31958761-32363980	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
6	esv3363142	chr14:32083250-32120361	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS	n/a	n/a	inside rSNPs	diseases
7	nsv901591	chr14:32093548-32202677	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv901592	chr14:32093548-32267323	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32046200-32110600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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