Variant report

Variant	rs8005857
Chromosome Location	chr14:32139576-32139577
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10047861	0.82[EUR][1000 genomes]
rs10132862	0.82[EUR][1000 genomes]
rs10137974	0.82[EUR][1000 genomes]
rs10142679	0.82[EUR][1000 genomes]
rs10148038	0.82[EUR][1000 genomes]
rs10149668	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10150831	0.82[EUR][1000 genomes]
rs10151156	0.82[EUR][1000 genomes]
rs11846852	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11847014	0.82[EUR][1000 genomes]
rs11847815	0.82[EUR][1000 genomes]
rs11848462	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11850880	0.82[EUR][1000 genomes]
rs12894985	0.82[EUR][1000 genomes]
rs13379320	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1430424	0.82[EUR][1000 genomes]
rs17098019	0.82[EUR][1000 genomes]
rs17098168	0.82[EUR][1000 genomes]
rs1982013	0.82[EUR][1000 genomes]
rs1982014	0.82[EUR][1000 genomes]
rs2115957	0.82[EUR][1000 genomes]
rs2120135	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2120137	0.94[AMR][1000 genomes]
rs2120138	0.85[AMR][1000 genomes]
rs2163302	0.82[EUR][1000 genomes]
rs2378899	0.82[EUR][1000 genomes]
rs2378900	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2378934	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28446445	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28532719	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28806946	0.82[EUR][1000 genomes]
rs28862034	0.82[EUR][1000 genomes]
rs28864375	0.82[AMR][1000 genomes]
rs55674235	0.85[AMR][1000 genomes]
rs58097888	0.82[EUR][1000 genomes]
rs58280106	0.82[AMR][1000 genomes]
rs58900150	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs59002501	0.82[EUR][1000 genomes]
rs59679301	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6571449	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6571451	0.85[AMR][1000 genomes]
rs6571455	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6571456	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6571460	0.82[AMR][1000 genomes]
rs6571465	0.82[EUR][1000 genomes]
rs6571466	0.82[EUR][1000 genomes]
rs6571467	0.82[EUR][1000 genomes]
rs7140277	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7141267	0.82[EUR][1000 genomes]
rs7141477	0.82[EUR][1000 genomes]
rs7141722	0.82[EUR][1000 genomes]
rs7143532	0.82[EUR][1000 genomes]
rs7144178	0.82[EUR][1000 genomes]
rs7145785	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7147779	0.82[EUR][1000 genomes]
rs7148248	0.82[EUR][1000 genomes]
rs7150042	0.82[EUR][1000 genomes]
rs7150488	0.82[EUR][1000 genomes]
rs7150851	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7151198	0.82[EUR][1000 genomes]
rs7153885	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7154277	0.82[EUR][1000 genomes]
rs7156676	0.82[EUR][1000 genomes]
rs7156907	0.82[EUR][1000 genomes]
rs7158443	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7158652	0.82[EUR][1000 genomes]
rs7159193	0.82[EUR][1000 genomes]
rs7161592	0.80[AFR][1000 genomes]
rs7161628	0.82[EUR][1000 genomes]
rs73253213	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73255199	0.82[EUR][1000 genomes]
rs74043606	0.82[EUR][1000 genomes]
rs8003033	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8004616	0.88[AMR][1000 genomes]
rs8005763	0.82[EUR][1000 genomes]
rs8009012	0.82[EUR][1000 genomes]
rs8010697	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8015179	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8015245	0.82[EUR][1000 genomes]
rs8015640	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8018137	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8020874	0.82[EUR][1000 genomes]
rs8021182	0.82[EUR][1000 genomes]
rs8022324	0.82[EUR][1000 genomes]
rs970489	0.82[EUR][1000 genomes]
rs9743593	0.82[EUR][1000 genomes]
rs9743878	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934206	chr14:31887749-32257097	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv564180	chr14:31958566-32368934	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv564181	chr14:31958761-32363980	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv901591	chr14:32093548-32202677	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv901592	chr14:32093548-32267323	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv564182	chr14:32110519-32584337	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv1046526	chr14:32110537-32567426	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32117000-32148200	Weak transcription	Pancreas	Pancrea
2	chr14:32135200-32147000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr14:32135400-32147000	Weak transcription	HepG2	liver
4	chr14:32135800-32170800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr14:32136000-32144200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr14:32136200-32147000	Weak transcription	Fetal Stomach	stomach
7	chr14:32137000-32146800	Weak transcription	Spleen	Spleen
8	chr14:32137200-32147000	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr14:32137200-32147400	Weak transcription	Left Ventricle	heart
10	chr14:32137200-32149400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr14:32137600-32146800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr14:32138200-32147000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr14:32138200-32147200	Weak transcription	Lung	lung
14	chr14:32138600-32146800	Weak transcription	Stomach Smooth Muscle	stomach
15	chr14:32139000-32147800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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