Variant report

Variant	rs2186414
Chromosome Location	chr11:58530764-58530765
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF7L2	chr11:58530096-58530923	HepG2	liver:	n/a	n/a
2	NFIC	chr11:58529983-58530885	HepG2	liver:	n/a	n/a
3	FOXA1	chr11:58529731-58530767	HepG2	liver:	n/a	n/a
4	FOXA2	chr11:58529040-58530816	HepG2	liver:	n/a	chr11:58529329-58529341
5	MYBL2	chr11:58529718-58530803	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:58530284..58532765-chr11:58534043..58536278,2	K562	blood:

Variant related genes	Relation type
ENSG00000254926	TF binding region

Extended variants
information (count: 137 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:134)

rs_ID	r²[population]
rs1014068	0.82[AMR][1000 genomes]
rs10792181	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10792183	0.82[AMR][1000 genomes]
rs10792184	0.86[JPT][hapmap];0.82[AMR][1000 genomes]
rs10792185	0.86[JPT][hapmap];0.82[AMR][1000 genomes]
rs10896825	0.82[CHB][hapmap];0.82[CHD][hapmap];0.86[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10896828	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10896830	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10896832	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10896845	0.82[AMR][1000 genomes]
rs10896847	0.82[AMR][1000 genomes]
rs10896848	0.82[AMR][1000 genomes]
rs10896849	0.82[AMR][1000 genomes]
rs10896851	0.82[AMR][1000 genomes]
rs10896852	0.82[AMR][1000 genomes]
rs10896853	0.82[AMR][1000 genomes]
rs10896854	0.85[JPT][hapmap];0.82[AMR][1000 genomes]
rs10896856	0.86[JPT][hapmap];0.82[AMR][1000 genomes]
rs10896857	0.85[JPT][hapmap]
rs10896858	0.86[JPT][hapmap];0.82[AMR][1000 genomes]
rs10896859	0.86[JPT][hapmap];0.81[AMR][1000 genomes]
rs11229612	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11229613	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11229617	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11229618	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11229620	0.85[EUR][1000 genomes]
rs11229623	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11229625	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11229626	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11229629	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11229649	0.82[AMR][1000 genomes]
rs11229650	0.82[AMR][1000 genomes]
rs11229651	0.86[JPT][hapmap];0.89[YRI][hapmap];0.82[AMR][1000 genomes]
rs11229653	0.82[AMR][1000 genomes]
rs11229655	0.86[JPT][hapmap];0.82[AMR][1000 genomes]
rs11229656	0.86[JPT][hapmap];0.82[AMR][1000 genomes]
rs11229657	0.81[AMR][1000 genomes]
rs11229658	0.80[CHB][hapmap];0.85[JPT][hapmap];0.82[AMR][1000 genomes]
rs11535770	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12146504	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12146511	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12223073	0.82[YRI][hapmap]
rs12224097	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12224475	0.82[AMR][1000 genomes]
rs12225778	0.85[JPT][hapmap];0.82[AMR][1000 genomes]
rs12226395	0.94[YRI][hapmap];0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12417075	0.92[ASW][hapmap];0.97[LWK][hapmap];0.91[MKK][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12419236	0.82[AMR][1000 genomes]
rs12420969	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12421060	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17153009	0.86[JPT][hapmap]
rs1893631	0.82[AMR][1000 genomes]
rs1893632	0.80[AMR][1000 genomes]
rs1938698	0.82[CHB][hapmap];0.82[GIH][hapmap];0.81[JPT][hapmap]
rs1938707	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1938708	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1938709	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1938711	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1938713	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1938714	0.81[CHB][hapmap];0.89[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1938715	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1938716	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1938717	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1943254	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1943258	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1943262	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1943263	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1943268	0.88[AFR][1000 genomes]
rs1943270	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1943271	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1943272	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1943276	0.82[AMR][1000 genomes]
rs1943277	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1943280	0.86[JPT][hapmap];0.82[AMR][1000 genomes]
rs1943281	0.86[JPT][hapmap];0.82[AMR][1000 genomes]
rs1943282	0.86[JPT][hapmap];0.82[AMR][1000 genomes]
rs1943285	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1943303	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1943305	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1943307	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1943308	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1954965	0.94[YRI][hapmap];0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2097018	0.82[AMR][1000 genomes]
rs2097019	0.82[AMR][1000 genomes]
rs2105743	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2156346	0.86[JPT][hapmap];0.82[AMR][1000 genomes]
rs2187264	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2212845	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2497368	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2497372	0.81[AMR][1000 genomes]
rs2497376	0.81[AMR][1000 genomes]
rs2497377	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4373954	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4418828	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs473287	0.82[CHB][hapmap];0.82[GIH][hapmap];0.81[JPT][hapmap]
rs483101	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs492795	0.84[ASN][1000 genomes]
rs4939220	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4939222	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4939226	0.86[JPT][hapmap];0.82[AMR][1000 genomes]
rs4939227	0.82[AMR][1000 genomes]
rs4939228	0.82[AMR][1000 genomes]
rs4939229	0.80[JPT][hapmap];0.81[AMR][1000 genomes]
rs4939230	0.86[JPT][hapmap];0.82[AMR][1000 genomes]
rs4939231	0.86[JPT][hapmap];0.82[AMR][1000 genomes]
rs507224	0.82[CHB][hapmap];0.82[CHD][hapmap];0.82[GIH][hapmap];0.81[JPT][hapmap];0.81[AMR][1000 genomes]
rs511772	0.86[ASN][1000 genomes]
rs521200	0.84[CHB][hapmap]
rs539567	0.86[ASN][1000 genomes]
rs542537	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs547654	0.84[ASN][1000 genomes]
rs550362	0.86[ASN][1000 genomes]
rs558274	0.81[CHB][hapmap]
rs55906811	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56000500	0.84[EUR][1000 genomes]
rs56383501	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56407726	0.80[AMR][1000 genomes]
rs56699801	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs570146	0.82[CHB][hapmap];0.82[GIH][hapmap];0.81[JPT][hapmap]
rs572006	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs572856	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs58504618	0.82[AMR][1000 genomes]
rs596847	0.82[CHB][hapmap];0.82[GIH][hapmap];0.81[JPT][hapmap]
rs614561	0.86[ASN][1000 genomes]
rs616779	0.86[ASN][1000 genomes]
rs667445	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs675423	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs675757	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.82[TSI][hapmap];0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7119206	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72927767	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72929706	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72929752	0.82[AMR][1000 genomes]
rs9888240	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9943656	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832168	chr11:58394060-58564651	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1050013	chr11:58394598-59221090	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv948365	chr11:58515163-59156405	Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58529800-58530800	Flanking Active TSS	HepG2	liver
2	chr11:58529800-58531000	Enhancers	Fetal Kidney	kidney
3	chr11:58529800-58531000	Enhancers	Pancreas	Pancrea
4	chr11:58529800-58531200	Enhancers	Fetal Intestine Large	intestine
5	chr11:58530000-58531200	Enhancers	Fetal Intestine Small	intestine
6	chr11:58530600-58536800	Enhancers	Liver	Liver

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