Variant report

Variant	rs542537
Chromosome Location	chr11:58492666-58492667
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:58488336..58491210-chr11:58491852..58494782,2	K562	blood:
2	chr11:58492036..58493774-chr11:58500571..58503538,2	K562	blood:

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10792184	0.83[JPT][hapmap]
rs10792185	0.83[JPT][hapmap]
rs10896818	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10896820	0.84[EUR][1000 genomes]
rs10896822	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10896825	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs10896854	0.81[JPT][hapmap]
rs10896856	0.83[JPT][hapmap]
rs10896857	0.82[JPT][hapmap]
rs10896858	0.83[JPT][hapmap]
rs10896859	0.83[JPT][hapmap]
rs11229593	0.83[EUR][1000 genomes]
rs11229594	0.91[YRI][hapmap];0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11229595	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11229596	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11229597	0.88[YRI][hapmap];0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11229601	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11229602	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11229603	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11229651	0.82[JPT][hapmap]
rs11229655	0.82[JPT][hapmap]
rs11229656	0.83[JPT][hapmap]
rs11229658	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs11530801	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12225778	0.82[JPT][hapmap]
rs17152916	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17153009	0.82[JPT][hapmap]
rs1938695	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1938696	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1938698	0.82[CHB][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1938701	0.83[JPT][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1938714	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs1938728	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1938730	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1941965	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1943271	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1943280	0.82[JPT][hapmap]
rs1943281	0.83[JPT][hapmap]
rs1943282	0.83[JPT][hapmap]
rs1943303	0.82[AMR][1000 genomes]
rs2156346	0.83[JPT][hapmap]
rs2186414	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2497372	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2497376	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2497377	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2497379	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35649133	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3920943	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs472569	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs473287	0.82[CHB][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs479854	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs483101	0.82[CHB][hapmap];0.87[JPT][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs487054	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs491849	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs492795	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4939226	0.83[JPT][hapmap]
rs4939230	0.83[JPT][hapmap]
rs4939231	0.82[JPT][hapmap]
rs507224	0.82[CHB][hapmap];0.86[JPT][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs511772	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs521200	0.85[CHB][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs522568	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs524234	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs524516	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs528136	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs539567	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs543032	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs547178	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs547654	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs547895	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs550362	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs558274	0.82[CHB][hapmap];0.85[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56073415	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs566084	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs570146	0.82[CHB][hapmap];0.86[JPT][hapmap];0.87[YRI][hapmap];0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs570244	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57121352	0.83[EUR][1000 genomes]
rs572006	0.83[CHB][hapmap];0.87[JPT][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs572856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs590157	0.85[EUR][1000 genomes]
rs591121	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs591628	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs596847	0.82[CHB][hapmap];0.86[JPT][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs614561	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs616779	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs621137	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs621780	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs628124	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs631103	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs667445	0.83[CHB][hapmap];0.87[JPT][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs675423	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs675757	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs677988	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72925740	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72925778	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72927728	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7951340	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832168	chr11:58394060-58564651	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1050013	chr11:58394598-59221090	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58480000-58493200	Weak transcription	Fetal Kidney	kidney
2	chr11:58481800-58493000	Weak transcription	Adipose Nuclei	Adipose
3	chr11:58492000-58493000	Enhancers	Liver	Liver
4	chr11:58492400-58493200	Weak transcription	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links