Variant report

Variant	rs524234
Chromosome Location	chr11:58481193-58481194
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:58456720..58459253-chr11:58480409..58482286,2	K562	blood:

Variant related genes	Relation type
ENSG00000197254	Chromatin interaction

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10792181	0.84[ASN][1000 genomes]
rs10896825	0.84[ASN][1000 genomes]
rs10896828	0.84[ASN][1000 genomes]
rs10896830	0.84[ASN][1000 genomes]
rs10896832	0.84[ASN][1000 genomes]
rs11229625	0.84[ASN][1000 genomes]
rs11229626	0.84[ASN][1000 genomes]
rs11229629	0.84[ASN][1000 genomes]
rs11535770	0.84[ASN][1000 genomes]
rs12146504	0.84[ASN][1000 genomes]
rs12146511	0.84[ASN][1000 genomes]
rs12224097	0.83[ASN][1000 genomes]
rs1938698	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1938701	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1938708	0.86[ASN][1000 genomes]
rs1938709	0.86[ASN][1000 genomes]
rs1938711	0.86[ASN][1000 genomes]
rs1938714	0.86[ASN][1000 genomes]
rs1938715	0.86[ASN][1000 genomes]
rs1938716	0.86[ASN][1000 genomes]
rs1938728	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1943254	0.84[ASN][1000 genomes]
rs1943258	0.84[ASN][1000 genomes]
rs1943262	0.84[ASN][1000 genomes]
rs1943263	0.84[ASN][1000 genomes]
rs1943272	0.84[ASN][1000 genomes]
rs1943303	0.84[ASN][1000 genomes]
rs1943307	0.84[ASN][1000 genomes]
rs1943308	0.84[ASN][1000 genomes]
rs2187264	0.84[ASN][1000 genomes]
rs2212845	0.84[ASN][1000 genomes]
rs2497368	0.86[ASN][1000 genomes]
rs2497372	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2497376	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2497377	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2497379	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs472569	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs473287	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs479854	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs483101	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs487054	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs491849	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs492795	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4939220	0.86[ASN][1000 genomes]
rs4939222	0.84[ASN][1000 genomes]
rs507224	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs511772	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs521200	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs522568	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs524516	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs528136	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs539567	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs542537	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs543032	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs547178	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs547654	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs547895	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs550362	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs558274	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56383501	0.84[ASN][1000 genomes]
rs566084	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs570146	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs570244	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs572006	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs572856	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs590157	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs591121	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs591628	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs596847	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs614561	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs616779	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs621137	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs621780	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs628124	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs631103	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs667445	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs675423	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs675757	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs677988	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7119206	0.84[ASN][1000 genomes]
rs72929706	0.84[ASN][1000 genomes]
rs9888240	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832168	chr11:58394060-58564651	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1050013	chr11:58394598-59221090	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58476800-58481800	Strong transcription	Adipose Nuclei	Adipose
2	chr11:58476800-58485400	Strong transcription	Liver	Liver
3	chr11:58480000-58493200	Weak transcription	Fetal Kidney	kidney

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