Variant report

Variant	rs11229602
Chromosome Location	chr11:58495844-58495845
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10896818	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10896820	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10896822	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11229578	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11229593	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11229594	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11229595	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11229596	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11229597	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11229601	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11229603	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11229612	0.86[ASN][1000 genomes]
rs11229613	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11229617	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11229618	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11229620	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11229623	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11229652	0.80[AMR][1000 genomes]
rs11229662	0.82[AMR][1000 genomes]
rs11530801	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12222236	0.80[AMR][1000 genomes]
rs12226395	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12417075	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12420969	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12421060	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17152916	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1938695	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1938696	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1938707	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1938713	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1938717	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1938730	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1941965	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1943277	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1943285	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1943305	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1954965	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2105743	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2497377	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35649133	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3920943	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4373954	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4418828	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs492795	0.80[AMR][1000 genomes]
rs511772	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs539567	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs542537	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs547654	0.80[AMR][1000 genomes]
rs550362	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55906811	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56000500	0.84[ASN][1000 genomes]
rs56073415	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56699801	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57121352	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs572856	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs60850183	0.82[AMR][1000 genomes]
rs614561	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs616779	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs675423	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs675757	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72925740	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72925778	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72927728	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72927767	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72929757	0.82[AMR][1000 genomes]
rs7951340	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9943655	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832168	chr11:58394060-58564651	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1050013	chr11:58394598-59221090	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58492800-58496800	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr11:58493000-58498200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr11:58493200-58496000	Enhancers	Primary T cells fromperipheralblood	blood
4	chr11:58493600-58496800	Enhancers	Primary T cells from cord blood	blood
5	chr11:58493600-58497000	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr11:58493800-58496000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
7	chr11:58493800-58496200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr11:58493800-58496800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr11:58494800-58496800	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr11:58495000-58496000	Weak transcription	Fetal Kidney	kidney
11	chr11:58495200-58496800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr11:58495200-58497600	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr11:58495200-58499400	Weak transcription	HepG2	liver
14	chr11:58495400-58497200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr11:58495400-58497600	Weak transcription	Fetal Intestine Large	intestine
16	chr11:58495400-58499600	Active TSS	Liver	Liver
17	chr11:58495800-58496000	Flanking Active TSS	Adipose Nuclei	Adipose

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