Variant report

Variant	rs11229596
Chromosome Location	chr11:58484656-58484657
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10896818	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10896820	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10896822	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11229578	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11229593	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11229594	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11229595	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11229597	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11229601	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11229602	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11229603	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11229612	0.84[ASN][1000 genomes]
rs11229613	0.84[ASN][1000 genomes]
rs11229617	0.82[ASN][1000 genomes]
rs11229618	0.82[ASN][1000 genomes]
rs11229620	0.82[ASN][1000 genomes]
rs11229623	0.82[ASN][1000 genomes]
rs11530801	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12226395	0.84[ASN][1000 genomes]
rs12417075	0.84[ASN][1000 genomes]
rs12420969	0.82[ASN][1000 genomes]
rs12421060	0.84[ASN][1000 genomes]
rs17152916	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1938695	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1938696	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1938707	0.83[ASN][1000 genomes]
rs1938713	0.84[ASN][1000 genomes]
rs1938717	0.85[ASN][1000 genomes]
rs1938730	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1941965	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1943277	0.82[ASN][1000 genomes]
rs1943285	0.82[ASN][1000 genomes]
rs1943305	0.82[ASN][1000 genomes]
rs1954965	0.82[ASN][1000 genomes]
rs2105743	0.82[ASN][1000 genomes]
rs2497377	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35649133	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3920943	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4373954	0.84[ASN][1000 genomes]
rs4418828	0.84[ASN][1000 genomes]
rs492795	0.86[AMR][1000 genomes]
rs511772	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs539567	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs542537	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs547654	0.86[AMR][1000 genomes]
rs550362	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55906811	0.82[ASN][1000 genomes]
rs56000500	0.82[ASN][1000 genomes]
rs56073415	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56699801	0.84[ASN][1000 genomes]
rs57121352	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs572006	0.80[AMR][1000 genomes]
rs572856	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs614561	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs616779	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs675423	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs675757	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72925740	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72925778	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72927728	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72927767	0.86[ASN][1000 genomes]
rs7951340	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832168	chr11:58394060-58564651	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1050013	chr11:58394598-59221090	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58476800-58485400	Strong transcription	Liver	Liver
2	chr11:58480000-58493200	Weak transcription	Fetal Kidney	kidney
3	chr11:58481800-58493000	Weak transcription	Adipose Nuclei	Adipose
4	chr11:58484000-58492200	Weak transcription	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links