Variant report

Variant	rs1938730
Chromosome Location	chr11:58471343-58471344
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:58469853..58471664-chr11:58475530..58477386,2	K562	blood:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10896818	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10896820	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10896822	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11229578	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11229593	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11229594	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11229595	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11229596	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11229597	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11229601	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11229602	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11229603	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11229612	0.85[ASN][1000 genomes]
rs11229613	0.85[ASN][1000 genomes]
rs11229617	0.83[ASN][1000 genomes]
rs11229618	0.83[ASN][1000 genomes]
rs11229620	0.83[ASN][1000 genomes]
rs11229623	0.83[ASN][1000 genomes]
rs11530801	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12226395	0.85[ASN][1000 genomes]
rs12417075	0.85[ASN][1000 genomes]
rs12420969	0.83[ASN][1000 genomes]
rs12421060	0.85[ASN][1000 genomes]
rs17152916	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1938695	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1938696	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1938707	0.84[ASN][1000 genomes]
rs1938713	0.85[ASN][1000 genomes]
rs1938717	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1941965	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1943277	0.83[ASN][1000 genomes]
rs1943285	0.83[ASN][1000 genomes]
rs1943305	0.83[ASN][1000 genomes]
rs1954965	0.83[ASN][1000 genomes]
rs2105743	0.83[ASN][1000 genomes]
rs2497377	0.85[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs35649133	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3920943	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4373954	0.85[ASN][1000 genomes]
rs4418828	0.85[ASN][1000 genomes]
rs492795	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs511772	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs539567	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs542537	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs547654	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs550362	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55906811	0.83[ASN][1000 genomes]
rs56000500	0.83[ASN][1000 genomes]
rs56073415	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56699801	0.85[ASN][1000 genomes]
rs57121352	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs572856	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs614561	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs616779	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs675423	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs675757	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72925740	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72925778	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72927728	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72927767	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7951340	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832168	chr11:58394060-58564651	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1050013	chr11:58394598-59221090	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv329	chr11:58451044-58478290	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58469200-58474600	ZNF genes & repeats	Liver	Liver
2	chr11:58470600-58474400	ZNF genes & repeats	Adipose Nuclei	Adipose
3	chr11:58470800-58471800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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