The 2.0 version of rSNPBase

Variant report

Variant rs2187952
Chromosome Location chr1:169481950-169481951
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:37 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:169477800-169482600 Weak transcription Placenta Placenta
2 chr1:169477800-169482600 Weak transcription Sigmoid Colon Sigmoid Colon
3 chr1:169478000-169482600 Weak transcription Primary monocytes fromperipheralblood blood
4 chr1:169478200-169482600 Weak transcription Primary hematopoietic stem cells short term culture blood
5 chr1:169478200-169487000 Weak transcription Primary T helper cells fromperipheralblood blood
6 chr1:169478600-169482600 Weak transcription Primary T helper cells PMA-I stimulated --
7 chr1:169478600-169482600 Weak transcription Primary T regulatory cells fromperipheralblood blood
8 chr1:169478800-169482000 Weak transcription Adipose Nuclei Adipose
9 chr1:169478800-169482600 Weak transcription Fetal Lung lung
10 chr1:169478800-169484000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
11 chr1:169478800-169488200 Weak transcription Small Intestine intestine
12 chr1:169479400-169482600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
13 chr1:169479400-169485000 Enhancers Hela-S3 cervix
14 chr1:169479600-169482600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
15 chr1:169480000-169482000 Weak transcription Primary neutrophils fromperipheralblood blood
16 chr1:169480000-169482000 Enhancers HMEC breast
17 chr1:169480000-169483000 Enhancers Muscle Satellite Cultured Cells --
18 chr1:169480200-169482000 Enhancers NHEK skin
19 chr1:169480600-169483600 Weak transcription HepG2 liver
20 chr1:169480800-169482400 Weak transcription NHLF lung
21 chr1:169480800-169483800 Weak transcription HSMMtube muscle
22 chr1:169481000-169482000 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
23 chr1:169481000-169484000 Weak transcription Stomach Mucosa stomach
24 chr1:169481200-169484000 Weak transcription Pancreatic Islets Pancreatic Islet
25 chr1:169481400-169482600 Weak transcription NHDF-Ad bronchial
26 chr1:169481400-169483600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
27 chr1:169481400-169485000 Strong transcription Primary T helper 17 cells PMA-I stimulated --
28 chr1:169481600-169482400 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
29 chr1:169481600-169482600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
30 chr1:169481800-169482000 Flanking Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
31 chr1:169481800-169482200 Enhancers ES-UCSF4 Cell Line embryonic stem cell
32 chr1:169481800-169482200 Weak transcription Osteobl bone
33 chr1:169481800-169482400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
34 chr1:169481800-169482400 Strong transcription Monocytes-CD14+_RO01746 blood
35 chr1:169481800-169483600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
36 chr1:169481800-169483800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
37 chr1:169481800-169493000 Strong transcription Liver Liver

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Last update: Aug 31, 2015