Variant report

Variant	rs10919186
Chromosome Location	chr1:169516700-169516701
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:169510436..169512418-chr1:169514269..169516717,2	MCF-7	breast:
2	chr1:169449555..169458933-chr1:169508181..169519645,22	MCF-7	breast:
3	chr1:169453402..169457978-chr1:169510259..169517954,11	MCF-7	breast:

Variant related genes	Relation type
ENSG00000213062	Chromatin interaction
ENSG00000117479	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10158595	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12121164	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12143223	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13306344	0.98[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13306345	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1894695	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1894696	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1988608	0.90[ASN][1000 genomes]
rs2187952	0.81[CEU][hapmap]
rs2239851	0.80[GIH][hapmap]
rs2298909	1.00[CHB][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs2420375	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2420376	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2420377	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3766110	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3766111	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3766112	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3766113	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4525	0.80[GIH][hapmap]
rs6017	0.80[GIH][hapmap]
rs6662593	0.80[GIH][hapmap]
rs6672595	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9287092	0.85[EUR][1000 genomes]
rs929130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9332595	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9332596	0.91[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs9332600	0.80[GIH][hapmap]
rs9332619	0.80[GIH][hapmap]
rs9332620	0.80[GIH][hapmap]
rs9332627	0.80[GIH][hapmap]
rs970741	0.80[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs10919186	C1orf129	cis	cerebellum	SCAN
rs10919186	CREG1	cis	parietal	SCAN
rs10919186	DCAF6	cis	parietal	SCAN
rs10919186	C1orf112	cis	parietal	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169498400-169524000	Weak transcription	Placenta	Placenta
2	chr1:169499000-169519000	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr1:169500200-169526800	Weak transcription	Left Ventricle	heart
4	chr1:169505800-169534800	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr1:169506200-169542800	Weak transcription	Right Ventricle	heart
6	chr1:169507000-169530800	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr1:169511000-169520000	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr1:169513600-169525800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr1:169515600-169517200	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr1:169515600-169517200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr1:169515800-169517200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr1:169515800-169518000	Weak transcription	HepG2	liver
13	chr1:169516000-169531400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr1:169516400-169517600	Strong transcription	Liver	Liver

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