Variant report

Variant	rs3766113
Chromosome Location	chr1:169515307-169515308
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:169434950..169436192-chr1:169515249..169516296,7	MCF-7	breast:
2	chr1:169452546..169456212-chr1:169513561..169516208,4	K562	blood:
3	chr1:169510436..169512418-chr1:169514269..169516717,2	MCF-7	breast:
4	chr1:169515126..169516318-chr21:43623703..43624223,3	K562	blood:
5	chr1:169449555..169458933-chr1:169508181..169519645,22	MCF-7	breast:
6	chr1:169453402..169457978-chr1:169510259..169517954,11	MCF-7	breast:
7	chr1:169434984..169435744-chr1:169515279..169516244,3	MCF-7	breast:
8	chr1:169509458..169510965-chr1:169512972..169515829,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000213062	Chromatin interaction
ENSG00000117479	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10158595	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10919186	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12121164	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12143223	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13306344	0.98[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13306345	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1894695	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1894696	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1988608	0.90[ASN][1000 genomes]
rs2298909	0.92[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs2420375	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2420376	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2420377	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3766110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3766111	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3766112	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6672595	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9287092	0.90[EUR][1000 genomes]
rs929130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9332595	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9332596	0.91[AFR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169498400-169524000	Weak transcription	Placenta	Placenta
2	chr1:169499000-169519000	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr1:169500200-169526800	Weak transcription	Left Ventricle	heart
4	chr1:169505800-169534800	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr1:169506200-169542800	Weak transcription	Right Ventricle	heart
6	chr1:169507000-169530800	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr1:169509600-169515600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr1:169510200-169515800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr1:169510800-169515600	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr1:169511000-169520000	Strong transcription	Primary neutrophils fromperipheralblood	blood
11	chr1:169513600-169525800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr1:169515000-169515800	Genic enhancers	HepG2	liver
13	chr1:169515200-169515600	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr1:169515200-169515800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr1:169515200-169516000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr1:169515200-169516400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr1:169515200-169516400	Genic enhancers	Liver	Liver

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