Variant report

Variant	rs2187980
Chromosome Location	chr6:30223513-30223514
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12174823	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12660499	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2239531	0.83[EUR][1000 genomes]
rs2240058	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2284167	0.83[EUR][1000 genomes]
rs2284171	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28730510	0.82[EUR][1000 genomes]
rs56183729	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62407543	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9348838	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9378189	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9378221	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9380173	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9391762	0.85[ASN][1000 genomes]
rs9391802	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9405046	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9461576	0.83[AFR][1000 genomes]
rs9468699	0.81[AFR][1000 genomes]
rs974962	0.84[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2187980	TRIM26	Cis_1M	lymphoblastoid	RTeQTL
rs2187980	HCG18	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30218800-30226000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:30222800-30226000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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