Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:30188017..30189614-chr6:30314561..30316760,2	MCF-7	breast:
2	chr6:30187236..30189646-chr6:30189831..30192507,2	K562	blood:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12175655	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12660499	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17188113	0.81[EUR][1000 genomes]
rs2074477	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2187980	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2239531	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2284167	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2284171	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2517602	0.93[ASN][1000 genomes]
rs28730510	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs41272587	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs41272591	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4282437	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56307380	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62407543	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9348838	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9366754	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9378221	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9380156	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9391677	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9391802	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9405046	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv884058	chr6:30182395-30202429	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9378189	TRIM26	Cis_1M	lymphoblastoid	RTeQTL
rs9378189	HCG18	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30182600-30189200	Weak transcription	Right Atrium	heart
2	chr6:30185400-30190400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr6:30187400-30191200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr6:30187800-30189400	Weak transcription	HepG2	liver

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