Variant report

Variant	rs12175655
Chromosome Location	chr6:30154910-30154911
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:30153704..30155997-chr6:30174654..30176677,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12660499	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17188015	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17188113	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17194460	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2074477	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2239531	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2284167	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2284171	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2517602	0.83[ASN][1000 genomes]
rs28730510	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3734837	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3815081	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs41272587	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs41272591	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4282437	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56307380	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62390201	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62390202	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9348838	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9366753	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9366754	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9368622	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9368624	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9378189	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9378221	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9380156	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9391677	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9391802	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs12175655	TRIM26	Cis_1M	lymphoblastoid	RTeQTL
rs12175655	HCG18	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30145000-30173800	Weak transcription	Right Atrium	heart
2	chr6:30148000-30155000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr6:30148000-30173000	Weak transcription	Fetal Heart	heart
4	chr6:30149000-30156400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr6:30149200-30157400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr6:30149600-30155000	Weak transcription	NHEK	skin
7	chr6:30150000-30155000	Weak transcription	HSMM	muscle
8	chr6:30150000-30156400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:30150200-30156400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:30150200-30163400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr6:30150400-30157000	Weak transcription	Fetal Kidney	kidney
12	chr6:30150600-30179200	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr6:30150800-30156200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr6:30151600-30161400	Strong transcription	Primary T cells from cord blood	blood
15	chr6:30151800-30155000	Strong transcription	Brain Substantia Nigra	brain
16	chr6:30151800-30158200	Strong transcription	Brain Cingulate Gyrus	brain
17	chr6:30151800-30160400	Strong transcription	Thymus	Thymus
18	chr6:30151800-30160600	Strong transcription	Fetal Intestine Small	intestine
19	chr6:30151800-30170400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr6:30152000-30157200	Strong transcription	Primary hematopoietic stem cells	blood
21	chr6:30152000-30159200	Strong transcription	Brain Anterior Caudate	brain
22	chr6:30152000-30160200	Strong transcription	Fetal Brain Female	brain
23	chr6:30152000-30160200	Strong transcription	Sigmoid Colon	Sigmoid Colon
24	chr6:30152000-30160400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr6:30152000-30160600	Strong transcription	Fetal Muscle Leg	muscle
26	chr6:30152000-30160800	Strong transcription	Primary T helper cells PMA-I stimulated	--
27	chr6:30152000-30166400	Strong transcription	Liver	Liver
28	chr6:30152000-30168000	Strong transcription	Fetal Intestine Large	intestine
29	chr6:30152000-30168200	Strong transcription	Primary T cells fromperipheralblood	blood
30	chr6:30152000-30168200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr6:30152000-30168200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr6:30152000-30169000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr6:30152000-30170600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr6:30152000-30172400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr6:30152200-30155000	Strong transcription	Gastric	stomach
36	chr6:30152200-30155200	Strong transcription	Cortex derived primary cultured neurospheres	brain
37	chr6:30152200-30159200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr6:30152200-30159400	Strong transcription	Brain Inferior Temporal Lobe	brain
39	chr6:30152200-30159600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr6:30152200-30159800	Strong transcription	Primary B cells from cord blood	blood
41	chr6:30152200-30159800	Strong transcription	Fetal Thymus	thymus
42	chr6:30152200-30160200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr6:30152200-30160200	Strong transcription	Fetal Muscle Trunk	muscle
44	chr6:30152200-30160200	Strong transcription	Stomach Smooth Muscle	stomach
45	chr6:30152200-30160400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr6:30152200-30160400	Strong transcription	Fetal Stomach	stomach
47	chr6:30152200-30160600	Strong transcription	Brain Hippocampus Middle	brain
48	chr6:30152200-30167800	Strong transcription	Primary monocytes fromperipheralblood	blood
49	chr6:30152200-30167800	Strong transcription	Primary B cells from peripheral blood	blood
50	chr6:30152200-30168000	Strong transcription	Monocytes-CD14+_RO01746	blood

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