Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:30127758..30130615-chr6:30135691..30137598,2	K562	blood:
2	chr6:30134299..30136514-chr6:30137950..30139841,2	MCF-7	breast:
3	chr6:30127588..30130090-chr6:30135576..30138983,3	K562	blood:

Variant related genes	Relation type
ENSG00000204613	Chromatin interaction
ENSG00000204610	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12175655	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17188015	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17188113	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17194460	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2074477	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2239531	0.80[ASN][1000 genomes]
rs28730510	0.80[ASN][1000 genomes]
rs3734837	0.83[EUR][1000 genomes]
rs3815081	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs41272587	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs41272591	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4282437	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56307380	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62390201	0.83[EUR][1000 genomes]
rs62390202	0.83[EUR][1000 genomes]
rs9366753	0.85[EUR][1000 genomes]
rs9366754	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9368622	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9380156	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9391677	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs9368624	HCG18	Cis_1M	lymphoblastoid	RTeQTL
rs9368624	TRIM26	Cis_1M	lymphoblastoid	RTeQTL
rs9368624	MDGA1	trans	parietal	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30132800-30136200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr6:30134600-30139600	Strong transcription	Duodenum Mucosa	Duodenum
3	chr6:30134800-30137000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:30134800-30137400	Strong transcription	Fetal Intestine Large	intestine
5	chr6:30134800-30137400	Strong transcription	Fetal Intestine Small	intestine
6	chr6:30134800-30137600	Strong transcription	Rectal Mucosa Donor 29	rectum
7	chr6:30134800-30137800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:30134800-30139600	Strong transcription	Rectal Mucosa Donor 31	rectum
9	chr6:30135000-30137200	Strong transcription	Colonic Mucosa	Colon
10	chr6:30135000-30137800	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr6:30135000-30139000	Strong transcription	Liver	Liver
12	chr6:30135400-30137400	Strong transcription	Sigmoid Colon	Sigmoid Colon
13	chr6:30135600-30136400	Weak transcription	Primary hematopoietic stem cells	blood
14	chr6:30135600-30141200	Strong transcription	HepG2	liver

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