Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:30110146..30111985-chr6:30113491..30115046,2	K562	blood:
2	chr6:30107127..30109634-chr6:30113826..30115474,2	MCF-7	breast:
3	chr6:30107405..30110939-chr6:30112076..30114448,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12175655	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17188015	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17188113	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17194460	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2074477	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2239531	0.81[EUR][1000 genomes]
rs2284167	0.81[EUR][1000 genomes]
rs3734837	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs41272587	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41272591	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4282437	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56307380	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62390201	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62390202	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9366753	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9366754	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9368622	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9368624	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9380156	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9391677	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9391802	0.81[EUR][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs3815081	HCG18	cis	multi-tissue	Pritchard
rs3815081	HCG18	Cis_1M	lymphoblastoid	RTeQTL
rs3815081	HLA-L	cis	lymphoblastoid	seeQTL
rs3815081	TRIM26	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30112600-30114200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:30112800-30119200	Strong transcription	Placenta	Placenta
3	chr6:30112800-30120800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr6:30113000-30114600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr6:30113000-30119600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr6:30113600-30114200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
7	chr6:30113600-30114800	Genic enhancers	Fetal Intestine Small	intestine
8	chr6:30113800-30114200	Enhancers	H1 Cell Line	embryonic stem cell
9	chr6:30113800-30118600	Weak transcription	Fetal Intestine Large	intestine

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