Variant report

Variant	rs17194460
Chromosome Location	chr6:30131546-30131547
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:27)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:27 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:30130699-30131808	HepG2	liver:	n/a	n/a
2	MAX	chr6:30130752-30132018	HepG2	liver:	n/a	n/a
3	MAX	chr6:30130726-30132006	HepG2	liver:	n/a	n/a
4	YY1	chr6:30130813-30131870	HepG2	liver:	n/a	n/a
5	ZEB1	chr6:30130574-30132078	HepG2	liver:	n/a	n/a
6	MXI1	chr6:30130794-30131731	HepG2	liver:	n/a	n/a
7	MYBL2	chr6:30130674-30131693	HepG2	liver:	n/a	n/a
8	TAF1	chr6:30130708-30131751	HepG2	liver:	n/a	n/a
9	MAX	chr6:30130902-30131594	HepG2	liver:	n/a	n/a
10	HDAC2	chr6:30130678-30131775	HepG2	liver:	n/a	chr6:30130979-30130987
11	CEBPD	chr6:30130677-30131642	HepG2	liver:	n/a	n/a
12	RCOR1	chr6:30130832-30131854	HepG2	liver:	n/a	n/a
13	FOXA1	chr6:30130729-30131659	HepG2	liver:	n/a	n/a
14	MBD4	chr6:30130670-30131591	HepG2	liver:	n/a	n/a
15	SIN3AK20	chr6:30130807-30131647	HepG2	liver:	n/a	n/a
16	NFIC	chr6:30130739-30131703	HepG2	liver:	n/a	n/a
17	TAF1	chr6:30130760-30131751	HepG2	liver:	n/a	n/a
18	HEY1	chr6:30130732-30131630	HepG2	liver:	n/a	n/a
19	TEAD4	chr6:30130722-30131645	HepG2	liver:	n/a	n/a
20	POLR2A	chr6:30130743-30131631	HepG2	liver:	n/a	n/a
21	MYBL2	chr6:30130640-30131664	HepG2	liver:	n/a	n/a
22	MAZ	chr6:30131515-30131654	HepG2	liver:	n/a	n/a
23	POLR2A	chr6:30130737-30131586	HepG2	liver:	n/a	n/a
24	HNF4A	chr6:30130750-30131708	HepG2	liver:	n/a	chr6:30131222-30131237 chr6:30130978-30130993 chr6:30130979-30130987 chr6:30131222-30131237
25	ZEB1	chr6:30130597-30131644	HepG2	liver:	n/a	n/a
26	HNF4G	chr6:30130733-30131638	HepG2	liver:	n/a	chr6:30130978-30130993 chr6:30130979-30130987 chr6:30131222-30131237
27	MBD4	chr6:30130741-30131560	HepG2	liver:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:30131526-30131576	SK-N-MC	brain:	n/a
2	chr6:30131526-30131576	MCF10A-Er-Src	breast:	n/a
3	chr6:30131526-30131576	HPAEpiC	pulmonary alveolar:	n/a
4	chr6:30131526-30131576	Hepatocyte	liver:	n/a
5	chr6:30131526-30131576	HMEC	breast:	n/a
6	chr6:30131526-30131576	PrEC	prostate:	n/a
7	chr6:30131526-30131576	HRPEpiC	eye:	n/a
8	chr6:30131526-30131576	HRCEpiC	kidney:	n/a
9	chr6:30131526-30131576	SK-N-SH	brain:	n/a
10	chr6:30131526-30131576	AG09309	skin:	n/a
11	chr6:30131526-30131576	NH-A	brain:	n/a
12	chr6:30131526-30131576	LNCaP	prostate:	n/a
13	chr6:30131526-30131576	SKMC	muscle:	n/a
14	chr6:30131526-30131576	HL-60	blood:	n/a
15	chr6:30131526-30131576	IMR90	lung:	fetal
16	chr6:30131526-30131576	HCF	heart:	n/a
17	chr6:30131526-30131576	CMK	blood:	n/a
18	chr6:30131526-30131576	GM06990	blood:	n/a
19	chr6:30131526-30131576	HepG2	liver:	n/a
20	chr6:30131526-30131576	AG09319	gingival:	n/a
21	chr6:30131526-30131576	HRE	kidney:	n/a
22	chr6:30131526-30131576	HEK293	kidney:	embryo
23	chr6:30131526-30131576	GM12878	blood:	n/a
24	chr6:30131526-30131576	NHBE	bronchial:	n/a
25	chr6:30131526-30131576	PANC-1	pancreas:	n/a
26	chr6:30131526-30131576	Hela-S3	cervix:	n/a
27	chr6:30131526-30131576	HNPCEpiC	eye:	n/a
28	chr6:30131526-30131576	HCM	heart:	n/a
29	chr6:30131526-30131576	BJ	skin:	n/a
30	chr6:30131526-30131576	AoSMC	blood vessel:	n/a
31	chr6:30131526-30131576	T-47D	breast:	n/a
32	chr6:30131526-30131576	HAEpiC	amniotic membrane:	n/a
33	chr6:30131526-30131576	ProgFib	skin:	n/a
34	chr6:30131526-30131576	HUVEC	blood vessel:	n/a
35	chr6:30131526-30131576	ovcar-3	ovarian:	n/a
36	chr6:30131526-30131576	Jurkat	blood:	n/a
37	chr6:30131526-30131576	BE2_C	brain:	n/a
38	chr6:30131526-30131576	HCT-116	colon:	n/a
39	chr6:30131526-30131576	PFSK-1	brain:	n/a
40	chr6:30131526-30131576	GM12891	blood:	n/a
41	chr6:30131526-30131576	NHDF-neo	bronchial:	n/a
42	chr6:30131526-30131576	HIPEpiC	eye:	n/a
43	chr6:30131526-30131576	GM19239	blood:	n/a
44	chr6:30131526-30131576	SAEC	small airway:	n/a
45	chr6:30131526-30131576	A549	lung:	n/a
46	chr6:30131526-30131576	U87	brain:	n/a
47	chr6:30131526-30131576	MCF-7	breast:	n/a
48	chr6:30131526-30131576	H1-hESC	embryonic stem cell:	embryo
49	chr6:30131526-30131576	HEEpiC	esophagus:	n/a
50	chr6:30131526-30131576	AG10803	skin:	n/a

No data

Variant related genes	Relation type
TRIM10	TF binding region
TRIM15	TF binding region
TRIM15	CpG island
TRIM10	CpG island

Extended variants
information (count: 18 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12175655	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17188015	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17188113	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2074477	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3734837	0.83[EUR][1000 genomes]
rs3815081	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs41272587	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41272591	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4282437	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56307380	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62390201	0.83[EUR][1000 genomes]
rs62390202	0.83[EUR][1000 genomes]
rs9366753	0.84[EUR][1000 genomes]
rs9366754	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9368622	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9368624	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9380156	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9391677	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs17194460	HCG18	Cis_1M	lymphoblastoid	RTeQTL
rs17194460	TRIM26	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30124800-30132600	Weak transcription	Right Atrium	heart
2	chr6:30130200-30133000	Active TSS	Colonic Mucosa	Colon
3	chr6:30130400-30132800	Active TSS	Rectal Mucosa Donor 29	rectum
4	chr6:30130600-30131800	Active TSS	Fetal Intestine Small	intestine
5	chr6:30130600-30132000	Active TSS	Rectal Mucosa Donor 31	rectum
6	chr6:30130800-30131600	Enhancers	H1 Cell Line	embryonic stem cell
7	chr6:30130800-30131800	Active TSS	Liver	Liver
8	chr6:30130800-30132000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:30130800-30132000	Bivalent Enhancer	Dnd41	blood
10	chr6:30130800-30132400	Active TSS	Duodenum Mucosa	Duodenum
11	chr6:30130800-30132600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr6:30130800-30132600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr6:30131000-30131800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr6:30131000-30132800	Active TSS	Rectal Smooth Muscle	rectum
15	chr6:30131200-30131600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
16	chr6:30131200-30131600	Enhancers	Pancreas	Pancrea
17	chr6:30131200-30131600	Active TSS	Stomach Mucosa	stomach
18	chr6:30131200-30132400	Bivalent/Poised TSS	HepG2	liver
19	chr6:30131200-30134200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr6:30131400-30131600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
21	chr6:30131400-30131600	Active TSS	Hela-S3	cervix
22	chr6:30131400-30132000	Flanking Active TSS	Fetal Intestine Large	intestine
23	chr6:30131400-30132800	Active TSS	Duodenum Smooth Muscle	Duodenum
24	chr6:30131400-30132800	Active TSS	Sigmoid Colon	Sigmoid Colon
25	chr6:30131400-30132800	Enhancers	K562	blood
26	chr6:30131400-30134800	Weak transcription	Primary hematopoietic stem cells	blood
27	chr6:30131400-30134800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr6:30131400-30134800	Weak transcription	Primary T helper cells PMA-I stimulated	--

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