Variant report

Variant	rs3734837
Chromosome Location	chr6:30080036-30080037
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:30080027-30080103	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:30072138..30074365-chr6:30079433..30082098,2	K562	blood:
2	chr6:30072893..30076173-chr6:30078690..30081417,3	MCF-7	breast:
3	chr6:30073473..30076763-chr6:30077230..30080756,3	K562	blood:

Variant related genes	Relation type
TRIM31	TF binding region
ENSG00000231226	Chromatin interaction
ENSG00000204616	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12175655	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17188015	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17188113	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17194460	0.83[EUR][1000 genomes]
rs2074477	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3815081	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs41272587	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs41272591	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4282437	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56307380	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62390186	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62390201	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62390202	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9366753	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9366754	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9368622	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9368624	0.83[EUR][1000 genomes]
rs9378220	0.83[EUR][1000 genomes]
rs9380156	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9391677	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432866	chr6:30026321-30080921	Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv884055	chr6:30078275-30087776	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs3734837	TRIM26	Cis_1M	lymphoblastoid	RTeQTL
rs3734837	HLA-L	cis	lymphoblastoid	seeQTL
rs3734837	HCG18	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30078200-30080600	Active TSS	Stomach Mucosa	stomach
2	chr6:30078400-30081400	Active TSS	Rectal Mucosa Donor 29	rectum
3	chr6:30079000-30080400	Bivalent/Poised TSS	Fetal Stomach	stomach
4	chr6:30079200-30080200	Active TSS	Rectal Mucosa Donor 31	rectum
5	chr6:30079200-30081000	Active TSS	Colonic Mucosa	Colon
6	chr6:30079400-30080400	Bivalent/Poised TSS	Small Intestine	intestine
7	chr6:30079400-30080600	Flanking Active TSS	Hela-S3	cervix
8	chr6:30079600-30080400	Enhancers	A549	lung
9	chr6:30080000-30080200	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
10	chr6:30080000-30080200	Flanking Active TSS	GM12878-XiMat	blood
11	chr6:30080000-30080200	Bivalent Enhancer	HepG2	liver
12	chr6:30080000-30080400	Active TSS	Fetal Intestine Small	intestine
13	chr6:30080000-30080600	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
14	chr6:30080000-30080600	Enhancers	Gastric	stomach
15	chr6:30080000-30080600	Active TSS	Rectal Smooth Muscle	rectum
16	chr6:30080000-30080800	Flanking Active TSS	Fetal Intestine Large	intestine
17	chr6:30080000-30081200	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
18	chr6:30080000-30081800	Enhancers	Liver	Liver

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