Variant report

Variant	rs9366754
Chromosome Location	chr6:30152033-30152034
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:30146840..30149453-chr6:30151238..30153459,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12175655	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12660499	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17188015	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17188113	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17194460	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2074477	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2239531	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2284167	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2284171	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2517602	0.83[ASN][1000 genomes]
rs28730510	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3734837	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3815081	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs41272587	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs41272591	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4282437	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56307380	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62390201	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62390202	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9348838	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9366753	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9368622	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9368624	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9378189	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9378221	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9380156	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9391677	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9391802	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9366754	MLN	cis	parietal	SCAN
rs9366754	HCG18	cis	multi-tissue	Pritchard

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30145000-30173800	Weak transcription	Right Atrium	heart
2	chr6:30148000-30152200	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr6:30148000-30152200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr6:30148000-30152600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr6:30148000-30155000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr6:30148000-30173000	Weak transcription	Fetal Heart	heart
7	chr6:30148200-30152400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr6:30148200-30154800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr6:30148400-30154000	Weak transcription	HUVEC	blood vessel
10	chr6:30148800-30152200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:30149000-30152200	Weak transcription	Primary B cells from cord blood	blood
12	chr6:30149000-30152400	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr6:30149000-30152800	Weak transcription	Fetal Brain Male	brain
14	chr6:30149000-30156400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr6:30149200-30152200	Weak transcription	Primary B cells from peripheral blood	blood
16	chr6:30149200-30152200	Weak transcription	Stomach Smooth Muscle	stomach
17	chr6:30149200-30152400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr6:30149200-30152600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr6:30149200-30152600	Weak transcription	HMEC	breast
20	chr6:30149200-30157400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr6:30149400-30152200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr6:30149400-30152400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr6:30149400-30152400	Weak transcription	Esophagus	oesophagus
24	chr6:30149400-30152600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr6:30149400-30152600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr6:30149400-30152600	Weak transcription	Left Ventricle	heart
27	chr6:30149400-30152600	Weak transcription	Ovary	ovary
28	chr6:30149400-30152800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr6:30149400-30153200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr6:30149400-30153400	Weak transcription	A549	lung
31	chr6:30149600-30152200	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr6:30149600-30152200	Weak transcription	Duodenum Mucosa	Duodenum
33	chr6:30149600-30152200	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr6:30149600-30152200	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr6:30149600-30152400	Weak transcription	GM12878-XiMat	blood
36	chr6:30149600-30152600	Weak transcription	Dnd41	blood
37	chr6:30149600-30153000	Weak transcription	Osteobl	bone
38	chr6:30149600-30155000	Weak transcription	NHEK	skin
39	chr6:30149800-30152200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr6:30149800-30152200	Weak transcription	Brain Germinal Matrix	brain
41	chr6:30149800-30152200	Weak transcription	Brain Hippocampus Middle	brain
42	chr6:30149800-30152200	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr6:30149800-30152200	Weak transcription	Fetal Thymus	thymus
44	chr6:30149800-30152200	Weak transcription	Gastric	stomach
45	chr6:30149800-30152400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr6:30149800-30152400	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr6:30149800-30152400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr6:30149800-30152400	Weak transcription	Lung	lung
49	chr6:30149800-30152400	Weak transcription	Psoas Muscle	Psoas
50	chr6:30149800-30152400	Weak transcription	HSMMtube	muscle

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