Variant report

Variant	rs2189295
Chromosome Location	chr7:25281864-25281865
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10232005	0.85[ASN][1000 genomes]
rs10245962	0.85[ASN][1000 genomes]
rs17151212	1.00[ASN][1000 genomes]
rs1859210	0.93[ASN][1000 genomes]
rs2007563	0.81[EUR][1000 genomes]
rs2523094	0.81[ASN][1000 genomes]
rs2523096	0.85[ASN][1000 genomes]
rs2523097	0.95[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2523098	0.89[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2523099	0.89[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2717874	0.85[ASN][1000 genomes]
rs2717892	0.83[ASN][1000 genomes]
rs2717893	0.83[ASN][1000 genomes]
rs2717915	0.87[EUR][1000 genomes]
rs2717916	0.87[EUR][1000 genomes]
rs2717917	0.83[ASN][1000 genomes]
rs2717918	0.83[ASN][1000 genomes]
rs2717919	0.83[ASN][1000 genomes]
rs2717920	0.83[ASN][1000 genomes]
rs2717921	0.87[EUR][1000 genomes]
rs2717922	0.83[ASN][1000 genomes]
rs55939158	0.98[ASN][1000 genomes]
rs57002799	0.90[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs59223159	0.90[EUR][1000 genomes]
rs73691527	1.00[ASN][1000 genomes]
rs73691529	0.90[EUR][1000 genomes]
rs757203	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606424	chr7:24982529-25466521	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv606426	chr7:25254125-25621579	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25275200-25284000	Weak transcription	Right Atrium	heart
2	chr7:25275400-25282800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr7:25280400-25283200	Weak transcription	Fetal Muscle Leg	muscle
4	chr7:25280600-25283200	Weak transcription	Fetal Lung	lung
5	chr7:25280600-25283600	Weak transcription	Colon Smooth Muscle	Colon
6	chr7:25281200-25282200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links