Variant report

Variant	rs2191906
Chromosome Location	chr2:210714162-210714163
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10178425	1.00[CHB][hapmap];0.92[MEX][hapmap];0.83[TSI][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10178431	1.00[CHB][hapmap];0.83[TSI][hapmap];0.83[YRI][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10178675	0.92[ASW][hapmap];1.00[CHB][hapmap];0.92[MEX][hapmap];0.80[MKK][hapmap];0.83[TSI][hapmap];0.93[YRI][hapmap];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10188289	0.85[ASW][hapmap];1.00[CHB][hapmap];0.92[GIH][hapmap];0.92[MEX][hapmap];0.83[TSI][hapmap];0.89[YRI][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10194322	0.82[YRI][hapmap];1.00[ASN][1000 genomes]
rs10194333	0.96[YRI][hapmap];0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10490024	1.00[CHB][hapmap];0.83[YRI][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11270377	1.00[ASN][1000 genomes]
rs12386218	1.00[CHB][hapmap];0.83[YRI][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13013030	0.83[GIH][hapmap]
rs13028068	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16843780	1.00[CHB][hapmap];0.93[YRI][hapmap];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6752217	1.00[CHB][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9288414	1.00[CHB][hapmap];0.92[MEX][hapmap];0.83[TSI][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431969	chr2:210682494-211074494	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1004426	chr2:210709999-211001680	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2191906	ZDBF2	cis	cerebellum	SCAN
rs2191906	IKZF2	cis	cerebellum	SCAN
rs2191906	GCGR	trans	parietal	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210682000-210769600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr2:210686000-210720400	Weak transcription	Brain Angular Gyrus	brain
3	chr2:210705200-210718000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr2:210705400-210715600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr2:210705600-210720200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr2:210706000-210715800	Weak transcription	Fetal Brain Female	brain
7	chr2:210706000-210719200	Weak transcription	Brain Anterior Caudate	brain
8	chr2:210707800-210718800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr2:210713600-210714400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr2:210713600-210714400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr2:210714000-210714400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr2:210714000-210714400	Enhancers	H9 Cell Line	embryonic stem cell
13	chr2:210714000-210714400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr2:210714000-210714400	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr2:210714000-210714400	Enhancers	HUES64 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links