Variant report

Variant	rs2193028
Chromosome Location	chr20:15609292-15609293
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs200753	0.83[JPT][hapmap]
rs462908	0.81[JPT][hapmap]
rs464188	0.87[ASN][1000 genomes]
rs6043401	0.81[GIH][hapmap];0.91[JPT][hapmap];0.84[TSI][hapmap]
rs6079910	0.85[GIH][hapmap]
rs6135468	0.81[JPT][hapmap]
rs956506	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.92[TSI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2751909	chr20:15489871-15656007	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15599000-15610000	Weak transcription	Fetal Heart	heart
2	chr20:15608000-15609600	Enhancers	H1 Cell Line	embryonic stem cell
3	chr20:15608600-15610000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr20:15608800-15609400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr20:15608800-15609400	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr20:15608800-15609400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr20:15608800-15609400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr20:15608800-15609400	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr20:15608800-15609600	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr20:15608800-15609600	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr20:15609000-15609400	Enhancers	H9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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