Variant report

Variant	rs6043401
Chromosome Location	chr20:15607678-15607679
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs200753	0.88[CHB][hapmap];0.97[CHD][hapmap];0.92[JPT][hapmap];0.88[ASN][1000 genomes]
rs2193028	0.81[GIH][hapmap];0.91[JPT][hapmap];0.84[TSI][hapmap]
rs6074923	0.85[CEU][hapmap]
rs6079897	0.92[CEU][hapmap];0.84[TSI][hapmap]
rs6105440	0.92[CEU][hapmap];0.92[TSI][hapmap]
rs956506	0.88[GIH][hapmap];0.91[JPT][hapmap];0.84[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2751909	chr20:15489871-15656007	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15599000-15610000	Weak transcription	Fetal Heart	heart
2	chr20:15606800-15608200	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr20:15607400-15608200	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr20:15607600-15608000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr20:15607600-15608200	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr20:15607600-15608200	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr20:15607600-15608200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr20:15607600-15608600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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