Variant report

Variant	rs2193035
Chromosome Location	chr12:68584640-68584641
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11570976	1.00[CEU][hapmap]
rs11571070	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11831576	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11835593	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12306852	0.90[ASN][1000 genomes]
rs12308338	0.90[ASN][1000 genomes]
rs12310687	0.90[ASN][1000 genomes]
rs12318069	0.90[ASN][1000 genomes]
rs3181032	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4913419	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57680423	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60017528	0.90[ASN][1000 genomes]
rs60079212	0.90[ASN][1000 genomes]
rs6581798	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7956688	0.81[ASN][1000 genomes]
rs7959900	0.90[ASN][1000 genomes]
rs7979999	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1847952	chr12:68544896-68693242	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:68583000-68585000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
2	chr12:68583000-68585000	Enhancers	Primary T killer memory cells from peripheral blood	blood
3	chr12:68583200-68584800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr12:68583200-68584800	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr12:68583200-68584800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr12:68583200-68584800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr12:68583800-68584800	Enhancers	HSMM	muscle
8	chr12:68584000-68584800	Enhancers	Primary T cells from cord blood	blood
9	chr12:68584200-68584800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links