Variant report

Variant	rs2193301
Chromosome Location	chr7:126470385-126470386
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	7:126470017-126471969..7:126890676-126899918	H1-hESC	embryonic stem cell:	embryo

Variant related genes	Relation type
ENSG00000179603	Chromatin interaction

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10901990	0.88[AMR][1000 genomes]
rs10901993	0.85[AMR][1000 genomes]
rs10902006	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10902007	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10902011	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10902018	0.83[AFR][1000 genomes]
rs1116322	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11245750	0.84[AMR][1000 genomes]
rs11245769	0.85[AMR][1000 genomes]
rs11245776	0.86[AMR][1000 genomes]
rs11245780	0.81[AMR][1000 genomes]
rs11245785	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11245797	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11502100	0.85[AMR][1000 genomes]
rs11512996	0.86[AMR][1000 genomes]
rs11512998	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11513058	0.88[AMR][1000 genomes]
rs11518834	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11518889	0.86[AMR][1000 genomes]
rs11532147	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12295328	0.89[AMR][1000 genomes]
rs1582371	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1582379	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1592586	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1895000	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2080533	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2160605	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2193325	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2313958	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4255567	0.85[AMR][1000 genomes]
rs4257008	0.85[AMR][1000 genomes]
rs4334047	0.82[AMR][1000 genomes]
rs4346000	0.85[AMR][1000 genomes]
rs4462338	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4531500	0.87[AMR][1000 genomes]
rs4539357	0.85[AMR][1000 genomes]
rs4564375	0.89[AMR][1000 genomes]
rs4980452	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4980459	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs4980463	0.83[AMR][1000 genomes]
rs4980496	0.81[AMR][1000 genomes]
rs4980498	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7293949	0.86[AMR][1000 genomes]
rs8175655	0.88[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs8186118	0.89[AMR][1000 genomes]
rs8186141	0.87[AMR][1000 genomes]
rs8186227	0.85[AMR][1000 genomes]
rs8186316	0.87[AMR][1000 genomes]
rs8186371	0.87[AMR][1000 genomes]
rs8186418	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8186466	0.86[AMR][1000 genomes]
rs8186467	0.86[AMR][1000 genomes]
rs8186511	0.89[AMR][1000 genomes]
rs8186537	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8186567	0.84[AMR][1000 genomes]
rs8186572	0.90[AMR][1000 genomes]
rs8186576	0.88[AMR][1000 genomes]
rs8186578	0.87[AMR][1000 genomes]
rs8188954	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs8189004	0.86[AMR][1000 genomes]
rs8189032	0.82[AMR][1000 genomes]
rs8189174	0.89[AMR][1000 genomes]
rs8189232	0.81[AMR][1000 genomes]
rs9703954	0.88[AMR][1000 genomes]
rs9704103	0.88[AMR][1000 genomes]
rs9705091	0.88[AMR][1000 genomes]
rs9795021	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529300	chr7:125669493-126587858	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032938	chr7:126067684-126587859	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv539119	chr7:126067684-126587859	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv889187	chr7:126219766-126478190	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	esv2761365	chr7:126452758-126506602	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv608376	chr7:126457779-126571077	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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