Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10103710	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10112358	0.94[ASN][1000 genomes]
rs10156375	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1030584	0.82[ASN][1000 genomes]
rs1030585	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1030586	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10957282	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10957283	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12544518	0.82[ASN][1000 genomes]
rs13277482	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16930415	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs28540225	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs35674021	0.82[ASN][1000 genomes]
rs6472093	0.82[AMR][1000 genomes]
rs6472094	0.82[AMR][1000 genomes]
rs6472104	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs6981013	0.80[ASN][1000 genomes]
rs6981563	0.81[ASN][1000 genomes]
rs7840470	0.82[ASN][1000 genomes]
rs9298075	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890967	chr8:64107847-64454446	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv6229	chr8:64282018-64326530	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:64310000-64314400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:64310200-64314200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr8:64311000-64312600	Enhancers	GM12878-XiMat	blood

Quick Search: