Variant report

Variant	rs6472093
Chromosome Location	chr8:64279602-64279603
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10093298	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10095044	0.81[EUR][1000 genomes]
rs10103710	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10112423	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1013259	0.81[EUR][1000 genomes]
rs10156375	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1030584	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1030585	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1030586	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10441558	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10808732	0.80[EUR][1000 genomes]
rs10957282	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10957283	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10957285	0.81[EUR][1000 genomes]
rs11775060	0.80[EUR][1000 genomes]
rs11777208	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11777936	0.80[EUR][1000 genomes]
rs11779425	0.83[CEU][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11782289	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11783042	0.83[CEU][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11783055	0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11786252	0.83[CEU][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12544518	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12545091	0.86[JPT][hapmap];0.87[MEX][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12549069	0.81[EUR][1000 genomes]
rs12550189	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13250116	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13265562	0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs13267865	0.81[EUR][1000 genomes]
rs13277482	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1431591	0.80[EUR][1000 genomes]
rs16930415	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2195758	0.82[AMR][1000 genomes]
rs2354894	0.80[EUR][1000 genomes]
rs28540225	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28696311	0.97[ASN][1000 genomes]
rs28877014	0.81[EUR][1000 genomes]
rs35674021	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4737646	0.81[EUR][1000 genomes]
rs4739089	0.86[JPT][hapmap];1.00[MEX][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4739090	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4739091	0.80[EUR][1000 genomes]
rs56033239	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6472094	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6472095	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6472096	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6472097	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6472103	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6472104	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6980685	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6981013	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6981563	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6987680	0.81[EUR][1000 genomes]
rs6993493	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6994236	0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs6997547	0.83[EUR][1000 genomes]
rs7006972	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7016013	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7459881	0.98[ASN][1000 genomes]
rs7459926	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7460026	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7462242	0.80[EUR][1000 genomes]
rs7464324	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7818456	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7825481	0.80[EUR][1000 genomes]
rs7834350	0.80[EUR][1000 genomes]
rs7840470	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7841852	0.84[CEU][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7841909	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9298075	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9298077	0.86[JPT][hapmap];1.00[MEX][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831342	chr8:64084331-64294941	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv890967	chr8:64107847-64454446	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:64278200-64281800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr8:64279200-64281200	Weak transcription	Brain Germinal Matrix	brain
3	chr8:64279400-64279800	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
4	chr8:64279400-64280000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
5	chr8:64279400-64281000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
6	chr8:64279600-64280000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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