Variant report

Variant	rs28696311
Chromosome Location	chr8:64276523-64276524
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10103710	0.86[ASN][1000 genomes]
rs10156375	0.88[ASN][1000 genomes]
rs1030584	0.84[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs1030585	0.86[ASN][1000 genomes]
rs1030586	0.86[ASN][1000 genomes]
rs10957282	0.80[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs10957283	0.82[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs11777208	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12544518	0.86[ASN][1000 genomes]
rs13277482	0.86[ASN][1000 genomes]
rs16930415	0.86[ASN][1000 genomes]
rs28540225	0.86[ASN][1000 genomes]
rs35674021	0.86[ASN][1000 genomes]
rs56033239	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs6472093	0.97[ASN][1000 genomes]
rs6472094	0.96[ASN][1000 genomes]
rs6472095	0.89[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs6472096	0.89[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs6472097	0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs6472103	0.83[ASN][1000 genomes]
rs6472104	0.83[ASN][1000 genomes]
rs6980685	0.80[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs6981013	0.86[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs6981563	0.88[ASN][1000 genomes]
rs6993493	0.83[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs7016013	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7459881	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7459926	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7460026	0.89[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7464324	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7818456	0.89[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7840470	0.86[ASN][1000 genomes]
rs7841909	0.89[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs9298075	0.80[AFR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831342	chr8:64084331-64294941	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv890967	chr8:64107847-64454446	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:64274800-64277000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:64274800-64278000	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr8:64274800-64278400	Enhancers	H1 Cell Line	embryonic stem cell
4	chr8:64274800-64278600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr8:64274800-64279200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr8:64274800-64279200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr8:64275000-64276600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr8:64275000-64276800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr8:64275000-64278200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr8:64275200-64278200	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr8:64275400-64277000	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr8:64275600-64276600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr8:64275600-64276800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr8:64275600-64276800	Enhancers	Brain Germinal Matrix	brain
15	chr8:64275800-64276600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr8:64275800-64276800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr8:64275800-64277000	Enhancers	Brain Substantia Nigra	brain
18	chr8:64275800-64278000	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr8:64275800-64279000	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr8:64276000-64277000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr8:64276000-64278400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr8:64276000-64278800	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr8:64276000-64279200	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr8:64276000-64279400	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr8:64276200-64276800	Enhancers	H9 Cell Line	embryonic stem cell
26	chr8:64276400-64276800	Enhancers	Brain Hippocampus Middle	brain
27	chr8:64276400-64277600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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