Variant report

Variant	rs2199007
Chromosome Location	chr6:77443905-77443906
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 147 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1017707	0.86[AMR][1000 genomes]
rs12200640	0.81[AMR][1000 genomes]
rs12208150	0.81[AMR][1000 genomes]
rs12528989	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13207756	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1381675	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs1457962	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs1545651	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1563658	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1598867	0.89[AMR][1000 genomes]
rs1809246	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2004870	0.93[EUR][1000 genomes]
rs4264999	0.86[AMR][1000 genomes]
rs6929083	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6938021	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7740357	0.89[AMR][1000 genomes]
rs9352378	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9359219	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9447795	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:128 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025439	chr6:77093795-77479689	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv538320	chr6:77093795-77479689	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1029793	chr6:77259011-77448806	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1026054	chr6:77294100-77479689	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1019520	chr6:77355212-77875164	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv538321	chr6:77355212-77875164	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv886217	chr6:77415155-77490717	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv886218	chr6:77415155-77500526	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv886220	chr6:77415155-77505717	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv886219	chr6:77415155-77515516	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	esv2763938	chr6:77417470-77461073	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv2757180	chr6:77418087-77476663	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv2759444	chr6:77418087-77476663	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv1842389	chr6:77419782-77453089	Active TSS Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv1034968	chr6:77425857-77452804	ZNF genes & repeats Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv5359	chr6:77428304-77469152	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv1025810	chr6:77429683-77452804	ZNF genes & repeats Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
18	esv1794099	chr6:77431031-77453089	Weak transcription Active TSS ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	n/a
19	esv1795260	chr6:77431031-77453089	Weak transcription Enhancers Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
20	esv1797452	chr6:77431031-77453089	ZNF genes & repeats Weak transcription Active TSS Enhancers	n/a	n/a	inside rSNPs	n/a
21	esv1797650	chr6:77431031-77453089	Enhancers Active TSS ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	n/a
22	esv1801024	chr6:77431031-77453089	ZNF genes & repeats Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a
23	esv1001714	chr6:77435844-77461638	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a
24	nsv1030901	chr6:77436147-77452804	Active TSS ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	n/a
25	nsv1026686	chr6:77436147-77461073	Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	n/a
26	esv1792887	chr6:77436159-77452804	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a
27	esv1841677	chr6:77436159-77452804	Active TSS Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
28	esv2761011	chr6:77436159-77461073	Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	n/a
29	esv1811749	chr6:77436181-77453264	Active TSS Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
30	esv1812528	chr6:77436181-77460911	Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	n/a
31	esv1831089	chr6:77436360-77452855	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a
32	esv1849622	chr6:77436360-77461581	Weak transcription Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
33	nsv1017922	chr6:77436520-77452804	ZNF genes & repeats Active TSS Weak transcription	n/a	n/a	inside rSNPs	n/a
34	nsv1028754	chr6:77436520-77461073	ZNF genes & repeats Active TSS Weak transcription	n/a	n/a	inside rSNPs	n/a
35	esv1828794	chr6:77436695-77453264	Active TSS ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	n/a
36	esv1830477	chr6:77436695-77461919	Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	n/a
37	nsv511321	chr6:77436710-77449339	Weak transcription Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
38	esv1836495	chr6:77436710-77453089	Weak transcription Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
39	esv1836660	chr6:77436710-77453089	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a
40	esv1839690	chr6:77436710-77453089	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a
41	nsv7926	chr6:77436849-77460973	Weak transcription Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
42	esv2630920	chr6:77436878-77461596	Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	n/a
43	nsv511900	chr6:77436965-77460444	Active TSS ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	n/a
44	esv3474571	chr6:77438233-77445531	ZNF genes & repeats Active TSS Weak transcription	n/a	n/a	inside rSNPs	n/a
45	esv3474572	chr6:77438233-77445531	ZNF genes & repeats Active TSS Weak transcription	n/a	n/a	inside rSNPs	n/a
46	nsv819255	chr6:77438254-77461121	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a
47	nsv820506	chr6:77439028-77460962	Active TSS Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
48	esv10050	chr6:77439258-77460349	Active TSS Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
49	esv1809770	chr6:77439553-77453464	Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	n/a
50	esv1813534	chr6:77439553-77453464	Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:77441000-77452800	Weak transcription	H1 Cell Line	embryonic stem cell

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