Variant report

Variant	rs2201150
Chromosome Location	chr3:46258902-46258903
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11919943	0.83[YRI][hapmap]
rs2007374	0.87[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2087726	0.82[ASN][1000 genomes]
rs2172247	0.82[ASN][1000 genomes]
rs3136663	0.84[YRI][hapmap]
rs4683184	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6775046	0.84[YRI][hapmap]
rs7624155	0.84[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2201150	CCR3	cis	Whole Blood	GTEx
rs2201150	CCR1	cis	Whole Blood	GTEx

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46255400-46262200	Weak transcription	Primary B cells from peripheral blood	blood
2	chr3:46256600-46262200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr3:46256800-46262000	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr3:46256800-46262200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr3:46256800-46262200	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr3:46257200-46259400	Enhancers	GM12878-XiMat	blood
7	chr3:46257800-46263400	Weak transcription	Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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