Variant report

Variant	rs3136663
Chromosome Location	chr3:46246227-46246228
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:46234025..46236211-chr3:46246101..46248526,2	MCF-7	breast:
2	chr3:46242531..46244471-chr3:46245460..46247325,2	K562	blood:
3	chr3:46237492..46239096-chr3:46244929..46246702,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11914967	0.83[YRI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11918542	0.92[AMR][1000 genomes]
rs11919943	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs11929424	0.92[AMR][1000 genomes]
rs11929453	0.92[AMR][1000 genomes]
rs11929460	0.92[AMR][1000 genomes]
rs17078685	0.92[AMR][1000 genomes]
rs17078689	0.92[AMR][1000 genomes]
rs2201150	0.84[YRI][hapmap]
rs2373156	0.83[YRI][hapmap]
rs34376347	0.81[AFR][1000 genomes]
rs34759782	0.94[AFR][1000 genomes]
rs35431271	0.92[AFR][1000 genomes]
rs36000011	0.92[AFR][1000 genomes]
rs56093858	0.92[AMR][1000 genomes]
rs56277808	0.92[AMR][1000 genomes]
rs56698532	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57560436	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59340338	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60714453	0.92[AMR][1000 genomes]
rs6775046	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs73830780	0.92[AMR][1000 genomes]
rs73830781	0.92[AMR][1000 genomes]
rs73830796	0.92[AMR][1000 genomes]
rs73833005	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833018	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833020	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7615337	0.92[AMR][1000 genomes]
rs7618935	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7620586	0.80[YRI][hapmap]
rs7624155	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs7631658	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7651539	0.83[YRI][hapmap]
rs7653045	0.83[YRI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46235400-46247600	Weak transcription	Placenta	Placenta
2	chr3:46235400-46249600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:46239800-46249400	Weak transcription	Primary T cells from cord blood	blood
4	chr3:46241200-46246600	Genic enhancers	Primary monocytes fromperipheralblood	blood
5	chr3:46241600-46247400	Weak transcription	Brain Substantia Nigra	brain
6	chr3:46242400-46246800	Weak transcription	Brain Hippocampus Middle	brain
7	chr3:46242800-46247400	Transcr. at gene 5' and 3'	Monocytes-CD14+_RO01746	blood
8	chr3:46243000-46249000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr3:46243200-46246600	Weak transcription	Adipose Nuclei	Adipose
10	chr3:46243400-46247800	Weak transcription	Duodenum Mucosa	Duodenum
11	chr3:46243600-46247200	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr3:46243800-46249400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr3:46244000-46246600	Weak transcription	GM12878-XiMat	blood
14	chr3:46244200-46246600	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr3:46245200-46248800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr3:46245400-46246400	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr3:46245400-46248000	Weak transcription	Lung	lung
18	chr3:46245600-46246400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr3:46245600-46247600	Weak transcription	Fetal Lung	lung
20	chr3:46245600-46248000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr3:46245600-46251800	Weak transcription	Spleen	Spleen
22	chr3:46245800-46248200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr3:46246200-46247200	Genic enhancers	Primary neutrophils fromperipheralblood	blood
24	chr3:46246200-46248200	Enhancers	Fetal Thymus	thymus

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