Variant report

Variant	rs7615337
Chromosome Location	chr3:46236788-46236789
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:46235082..46237927-chr3:46239251..46241191,2	K562	blood:
2	chr3:46224495..46227137-chr3:46235369..46237758,2	K562	blood:
3	chr3:46230225..46233149-chr3:46235288..46237782,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11914967	1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes]
rs11918542	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11922302	1.00[EUR][1000 genomes]
rs11929424	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11929453	1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11929460	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17078685	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17078689	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17078694	1.00[EUR][1000 genomes]
rs17078698	1.00[EUR][1000 genomes]
rs3136663	0.92[AMR][1000 genomes]
rs3136667	0.83[MKK][hapmap]
rs3136672	0.83[AFR][1000 genomes]
rs3176763	1.00[GIH][hapmap]
rs34611049	0.97[AFR][1000 genomes]
rs3918370	1.00[GIH][hapmap]
rs3918385	1.00[GIH][hapmap]
rs41405546	1.00[EUR][1000 genomes]
rs41434946	1.00[EUR][1000 genomes]
rs41491548	1.00[EUR][1000 genomes]
rs41491747	1.00[EUR][1000 genomes]
rs41511545	1.00[EUR][1000 genomes]
rs41537245	1.00[EUR][1000 genomes]
rs56093858	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56277808	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56698532	0.89[AMR][1000 genomes]
rs5742906	1.00[GIH][hapmap]
rs57560436	0.85[AMR][1000 genomes]
rs59340338	0.85[AMR][1000 genomes]
rs60714453	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73830780	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73830781	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73830796	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833005	0.89[AMR][1000 genomes]
rs73833018	0.89[AMR][1000 genomes]
rs73833020	0.89[AMR][1000 genomes]
rs7610869	1.00[EUR][1000 genomes]
rs7618935	0.85[AMR][1000 genomes]
rs7631658	0.85[AMR][1000 genomes]
rs7652954	1.00[GIH][hapmap]
rs7653045	1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46232400-46237000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr3:46235200-46241800	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr3:46235400-46247600	Weak transcription	Placenta	Placenta
4	chr3:46235400-46249600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:46235600-46237000	Enhancers	Monocytes-CD14+_RO01746	blood

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