Variant report

Variant	rs73833020
Chromosome Location	chr3:46262676-46262677
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11914967	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11918542	0.89[AMR][1000 genomes]
rs11926063	0.84[AFR][1000 genomes]
rs11929424	0.89[AMR][1000 genomes]
rs11929453	0.89[AMR][1000 genomes]
rs11929460	0.89[AMR][1000 genomes]
rs11929489	0.96[AFR][1000 genomes]
rs13062523	0.96[AFR][1000 genomes]
rs13088766	0.96[AFR][1000 genomes]
rs17078685	0.89[AMR][1000 genomes]
rs17078689	0.89[AMR][1000 genomes]
rs2373156	0.88[AFR][1000 genomes]
rs3136663	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34498313	0.96[AFR][1000 genomes]
rs34985947	0.94[AFR][1000 genomes]
rs35195804	0.96[AFR][1000 genomes]
rs35481399	0.88[AFR][1000 genomes]
rs35678191	0.81[AFR][1000 genomes]
rs35984988	0.96[AFR][1000 genomes]
rs41537946	0.96[AFR][1000 genomes]
rs56093858	0.89[AMR][1000 genomes]
rs56277808	0.89[AMR][1000 genomes]
rs56698532	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57115330	0.95[AFR][1000 genomes]
rs57560436	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59340338	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60714453	0.89[AMR][1000 genomes]
rs71327043	0.86[AFR][1000 genomes]
rs71327044	0.81[AFR][1000 genomes]
rs73830780	0.89[AMR][1000 genomes]
rs73830781	0.89[AMR][1000 genomes]
rs73830796	0.89[AMR][1000 genomes]
rs73833005	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833018	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7615337	0.89[AMR][1000 genomes]
rs7618935	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7620586	0.86[AFR][1000 genomes]
rs7628489	0.82[AFR][1000 genomes]
rs7631658	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7651539	0.86[AFR][1000 genomes]
rs7653045	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46257800-46263400	Weak transcription	Lung	lung
2	chr3:46262000-46266000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr3:46262200-46262800	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr3:46262200-46263000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr3:46262200-46263200	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr3:46262200-46265400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr3:46262200-46265600	Enhancers	Primary hematopoietic stem cells	blood
8	chr3:46262200-46267000	Enhancers	Primary B cells from peripheral blood	blood
9	chr3:46262400-46263800	Enhancers	Primary T cells from cord blood	blood
10	chr3:46262400-46266400	Enhancers	Primary B cells from cord blood	blood
11	chr3:46262600-46263200	Enhancers	Adipose Nuclei	Adipose
12	chr3:46262600-46265600	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr3:46262600-46266000	Enhancers	GM12878-XiMat	blood

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