Variant report

Variant	rs73833005
Chromosome Location	chr3:46257054-46257055
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:46247078..46249229-chr3:46254602..46257153,3	MCF-7	breast:
2	chr3:46256291..46259076-chr3:46275985..46278352,2	K562	blood:
3	chr3:46254841..46257750-chr3:46263557..46266874,3	K562	blood:
4	chr3:46254841..46257750-chr3:46264550..46266874,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11914967	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11918542	0.89[AMR][1000 genomes]
rs11926063	0.85[AFR][1000 genomes]
rs11929424	0.89[AMR][1000 genomes]
rs11929453	0.89[AMR][1000 genomes]
rs11929460	0.89[AMR][1000 genomes]
rs11929489	0.96[AFR][1000 genomes]
rs13062523	0.96[AFR][1000 genomes]
rs13088766	0.96[AFR][1000 genomes]
rs17078685	0.89[AMR][1000 genomes]
rs17078689	0.89[AMR][1000 genomes]
rs2373156	0.89[AFR][1000 genomes]
rs3136663	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34498313	0.96[AFR][1000 genomes]
rs34985947	0.95[AFR][1000 genomes]
rs35195804	0.96[AFR][1000 genomes]
rs35481399	0.89[AFR][1000 genomes]
rs35678191	0.82[AFR][1000 genomes]
rs35984988	0.96[AFR][1000 genomes]
rs41537946	0.96[AFR][1000 genomes]
rs56093858	0.89[AMR][1000 genomes]
rs56277808	0.89[AMR][1000 genomes]
rs56698532	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57115330	0.96[AFR][1000 genomes]
rs57560436	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59340338	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60714453	0.89[AMR][1000 genomes]
rs71327043	0.87[AFR][1000 genomes]
rs71327044	0.82[AFR][1000 genomes]
rs73830780	0.89[AMR][1000 genomes]
rs73830781	0.89[AMR][1000 genomes]
rs73830796	0.89[AMR][1000 genomes]
rs73833018	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833020	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7615337	0.89[AMR][1000 genomes]
rs7618935	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7620586	0.87[AFR][1000 genomes]
rs7628489	0.83[AFR][1000 genomes]
rs7631658	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7651539	0.87[AFR][1000 genomes]
rs7653045	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46255200-46257200	Enhancers	Fetal Thymus	thymus
2	chr3:46255400-46262200	Weak transcription	Primary B cells from peripheral blood	blood
3	chr3:46256000-46258000	Enhancers	Fetal Lung	lung
4	chr3:46256400-46257200	Enhancers	NHLF	lung
5	chr3:46256600-46257200	Bivalent Enhancer	GM12878-XiMat	blood
6	chr3:46256600-46257800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr3:46256600-46262200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr3:46256800-46262000	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr3:46256800-46262200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr3:46256800-46262200	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr3:46257000-46257600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr3:46257000-46257800	Enhancers	Lung	lung
13	chr3:46257000-46258000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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