Variant report

Variant	rs3918370
Chromosome Location	chr3:46394152-46394153
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:46322971..46325016-chr3:46392486..46394325,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11574431	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11574437	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11574439	1.00[AMR][1000 genomes]
rs11574440	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11574441	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11575814	1.00[EUR][1000 genomes]
rs11575817	1.00[EUR][1000 genomes]
rs11575818	1.00[EUR][1000 genomes]
rs11575822	1.00[EUR][1000 genomes]
rs13327723	1.00[EUR][1000 genomes]
rs17141003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17141076	1.00[EUR][1000 genomes]
rs17842821	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17842822	1.00[EUR][1000 genomes]
rs2373253	1.00[EUR][1000 genomes]
rs3136536	1.00[EUR][1000 genomes]
rs3176763	1.00[ASW][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];0.91[MKK][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3181037	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35212534	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3918385	1.00[GIH][hapmap]
rs41395345	1.00[EUR][1000 genomes]
rs41495153	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs55951695	1.00[EUR][1000 genomes]
rs56062522	1.00[EUR][1000 genomes]
rs5742906	1.00[GIH][hapmap]
rs57509359	1.00[EUR][1000 genomes]
rs57761566	1.00[EUR][1000 genomes]
rs58966767	1.00[EUR][1000 genomes]
rs59998539	1.00[EUR][1000 genomes]
rs60350631	1.00[EUR][1000 genomes]
rs61737000	1.00[EUR][1000 genomes]
rs6441969	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6770833	1.00[EUR][1000 genomes]
rs6798819	1.00[EUR][1000 genomes]
rs6801203	1.00[EUR][1000 genomes]
rs723577	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73830784	1.00[EUR][1000 genomes]
rs73831107	1.00[EUR][1000 genomes]
rs7611447	1.00[EUR][1000 genomes]
rs7614209	1.00[EUR][1000 genomes]
rs7638702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7640084	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7640708	1.00[EUR][1000 genomes]
rs7650273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7652954	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9282632	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv3323840	chr3:46352348-46497196	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3389382	chr3:46352798-46496696	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46390200-46395000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr3:46390200-46395200	Enhancers	Primary T cells fromperipheralblood	blood
3	chr3:46390200-46395200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr3:46390200-46396400	Enhancers	Primary hematopoietic stem cells	blood
5	chr3:46390200-46397800	Enhancers	Fetal Thymus	thymus
6	chr3:46390800-46396800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr3:46391200-46395200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr3:46391600-46395200	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr3:46391800-46395400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr3:46391800-46396400	Enhancers	Primary B cells from peripheral blood	blood
11	chr3:46392000-46395200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr3:46392000-46395200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr3:46392000-46395400	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr3:46392200-46396800	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr3:46392400-46394600	Weak transcription	Thymus	Thymus
16	chr3:46392400-46394600	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr3:46392400-46395200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr3:46392400-46396600	Enhancers	Dnd41	blood
19	chr3:46392400-46402600	Weak transcription	Spleen	Spleen
20	chr3:46392600-46394200	Weak transcription	Primary B cells from cord blood	blood
21	chr3:46393000-46394200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr3:46393000-46394400	Weak transcription	Primary T cells from cord blood	blood
23	chr3:46393200-46394600	Weak transcription	GM12878-XiMat	blood
24	chr3:46393600-46395400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr3:46393800-46394600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chr3:46393800-46394800	Enhancers	Placenta	Placenta
27	chr3:46394000-46395200	Enhancers	Primary T killer memory cells from peripheral blood	blood
28	chr3:46394000-46395400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr3:46394000-46395600	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr3:46394000-46396400	Enhancers	Placenta Amnion	Placenta Amnion

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