Variant report

Variant	rs60350631
Chromosome Location	chr3:46265217-46265218
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:46254841..46257750-chr3:46264550..46266874,2	K562	blood:
2	chr3:46254841..46257750-chr3:46263557..46266874,3	K562	blood:
3	chr3:46263535..46265918-chr3:46265991..46267590,2	K562	blood:
4	chr3:46262763..46265229-chr3:46268734..46270936,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11574431	1.00[EUR][1000 genomes]
rs11574437	1.00[EUR][1000 genomes]
rs11574440	1.00[EUR][1000 genomes]
rs11574441	1.00[EUR][1000 genomes]
rs11575814	1.00[EUR][1000 genomes]
rs11575817	1.00[EUR][1000 genomes]
rs11575818	1.00[EUR][1000 genomes]
rs11575822	1.00[EUR][1000 genomes]
rs13316935	1.00[EUR][1000 genomes]
rs13317076	1.00[EUR][1000 genomes]
rs17141003	1.00[EUR][1000 genomes]
rs17141076	1.00[EUR][1000 genomes]
rs17842821	1.00[EUR][1000 genomes]
rs17842822	1.00[EUR][1000 genomes]
rs3136536	1.00[EUR][1000 genomes]
rs3176763	1.00[EUR][1000 genomes]
rs3181037	1.00[EUR][1000 genomes]
rs35212534	1.00[EUR][1000 genomes]
rs3918370	1.00[EUR][1000 genomes]
rs41395345	1.00[EUR][1000 genomes]
rs41495153	1.00[EUR][1000 genomes]
rs56062522	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57509359	1.00[EUR][1000 genomes]
rs58966767	1.00[EUR][1000 genomes]
rs59998539	1.00[EUR][1000 genomes]
rs6441969	1.00[EUR][1000 genomes]
rs6770833	1.00[EUR][1000 genomes]
rs6798819	1.00[EUR][1000 genomes]
rs6801203	1.00[EUR][1000 genomes]
rs723577	1.00[EUR][1000 genomes]
rs73830784	1.00[EUR][1000 genomes]
rs7611447	1.00[EUR][1000 genomes]
rs7614209	1.00[EUR][1000 genomes]
rs7637926	1.00[EUR][1000 genomes]
rs7638702	1.00[EUR][1000 genomes]
rs7640084	1.00[EUR][1000 genomes]
rs7640708	1.00[EUR][1000 genomes]
rs7650273	1.00[EUR][1000 genomes]
rs7652954	1.00[EUR][1000 genomes]
rs9282632	1.00[EUR][1000 genomes]
rs9311389	1.00[EUR][1000 genomes]
rs9858301	1.00[EUR][1000 genomes]
rs9859087	1.00[EUR][1000 genomes]
rs9870657	1.00[EUR][1000 genomes]
rs9882765	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46262000-46266000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr3:46262200-46265400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr3:46262200-46265600	Enhancers	Primary hematopoietic stem cells	blood
4	chr3:46262200-46267000	Enhancers	Primary B cells from peripheral blood	blood
5	chr3:46262400-46266400	Enhancers	Primary B cells from cord blood	blood
6	chr3:46262600-46265600	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr3:46262600-46266000	Enhancers	GM12878-XiMat	blood
8	chr3:46263600-46265600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr3:46263600-46270000	Weak transcription	Fetal Lung	lung
10	chr3:46263800-46265600	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr3:46264200-46269600	Weak transcription	Placenta	Placenta
12	chr3:46264400-46276400	Weak transcription	Fetal Thymus	thymus
13	chr3:46264800-46265400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
14	chr3:46265000-46265600	Enhancers	Adipose Nuclei	Adipose
15	chr3:46265200-46265600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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