Variant report

Variant	rs41395345
Chromosome Location	chr3:46214112-46214113
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs11575814	1.00[EUR][1000 genomes]
rs11575817	1.00[EUR][1000 genomes]
rs11575818	1.00[EUR][1000 genomes]
rs12330199	1.00[EUR][1000 genomes]
rs13315494	1.00[EUR][1000 genomes]
rs13316935	1.00[EUR][1000 genomes]
rs13317076	1.00[EUR][1000 genomes]
rs1500006	1.00[AMR][1000 genomes]
rs17078579	1.00[AMR][1000 genomes]
rs17141003	1.00[EUR][1000 genomes]
rs28670183	1.00[EUR][1000 genomes]
rs3136536	1.00[EUR][1000 genomes]
rs3176763	1.00[EUR][1000 genomes]
rs3181037	1.00[EUR][1000 genomes]
rs3918370	1.00[EUR][1000 genomes]
rs41495153	1.00[EUR][1000 genomes]
rs56062522	1.00[EUR][1000 genomes]
rs57509359	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57857531	1.00[AMR][1000 genomes]
rs58692140	1.00[AMR][1000 genomes]
rs58966767	1.00[EUR][1000 genomes]
rs59253523	1.00[AMR][1000 genomes]
rs59862185	1.00[AMR][1000 genomes]
rs59998539	1.00[EUR][1000 genomes]
rs60350631	1.00[EUR][1000 genomes]
rs60829665	1.00[AMR][1000 genomes]
rs60854606	1.00[AMR][1000 genomes]
rs6441969	1.00[EUR][1000 genomes]
rs6770833	1.00[EUR][1000 genomes]
rs6774011	1.00[EUR][1000 genomes]
rs6798819	1.00[EUR][1000 genomes]
rs73830722	1.00[AMR][1000 genomes]
rs73830725	1.00[AMR][1000 genomes]
rs73830726	1.00[AMR][1000 genomes]
rs73830728	1.00[AMR][1000 genomes]
rs73830737	1.00[AMR][1000 genomes]
rs73830745	1.00[AMR][1000 genomes]
rs73830751	1.00[AMR][1000 genomes]
rs73830752	1.00[AMR][1000 genomes]
rs73830755	1.00[AMR][1000 genomes]
rs73830784	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7613756	1.00[EUR][1000 genomes]
rs7614209	1.00[EUR][1000 genomes]
rs7626225	1.00[EUR][1000 genomes]
rs7637926	1.00[EUR][1000 genomes]
rs7638702	1.00[EUR][1000 genomes]
rs7640084	1.00[EUR][1000 genomes]
rs7640708	1.00[EUR][1000 genomes]
rs7650273	1.00[EUR][1000 genomes]
rs7652954	1.00[EUR][1000 genomes]
rs9282632	1.00[EUR][1000 genomes]
rs9311389	1.00[EUR][1000 genomes]
rs9811093	1.00[EUR][1000 genomes]
rs9814852	1.00[EUR][1000 genomes]
rs9824752	1.00[EUR][1000 genomes]
rs9838832	1.00[EUR][1000 genomes]
rs9856418	1.00[EUR][1000 genomes]
rs9858301	1.00[EUR][1000 genomes]
rs9859087	1.00[EUR][1000 genomes]
rs9870657	1.00[EUR][1000 genomes]
rs9875356	1.00[EUR][1000 genomes]
rs9882765	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46207200-46215400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:46212200-46224800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links