Variant report

Variant	rs7613756
Chromosome Location	chr3:46041254-46041255
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:46035715..46038580-chr3:46039426..46042867,3	MCF-7	breast:
2	chr3:46038853..46042411-chr3:46045896..46048992,3	K562	blood:
3	chr3:46037094..46038836-chr3:46040974..46043756,2	K562	blood:

Variant related genes	Relation type
ENSG00000163820	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs12330199	1.00[EUR][1000 genomes]
rs13315494	1.00[EUR][1000 genomes]
rs13315955	0.85[AFR][1000 genomes]
rs13316935	1.00[EUR][1000 genomes]
rs13317076	1.00[EUR][1000 genomes]
rs2234359	1.00[EUR][1000 genomes]
rs28670183	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41395345	1.00[EUR][1000 genomes]
rs6770833	1.00[EUR][1000 genomes]
rs6774011	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73830784	1.00[EUR][1000 genomes]
rs7626225	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7637926	1.00[EUR][1000 genomes]
rs7643001	0.87[AFR][1000 genomes]
rs9311389	1.00[EUR][1000 genomes]
rs9810947	0.91[AFR][1000 genomes]
rs9811093	1.00[EUR][1000 genomes]
rs9814852	1.00[EUR][1000 genomes]
rs9815691	0.85[AFR][1000 genomes]
rs9819293	0.88[AFR][1000 genomes]
rs9824752	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9825221	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9829016	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9831791	1.00[EUR][1000 genomes]
rs9833683	1.00[EUR][1000 genomes]
rs9834935	0.87[AFR][1000 genomes]
rs9835366	1.00[EUR][1000 genomes]
rs9838832	1.00[EUR][1000 genomes]
rs9841919	1.00[EUR][1000 genomes]
rs9846033	0.88[AFR][1000 genomes]
rs9856418	1.00[EUR][1000 genomes]
rs9858301	1.00[EUR][1000 genomes]
rs9859087	1.00[EUR][1000 genomes]
rs9860381	0.95[AFR][1000 genomes]
rs9870657	1.00[EUR][1000 genomes]
rs9875356	1.00[EUR][1000 genomes]
rs9882765	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	esv2756987	chr3:46016464-46120400	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv2759145	chr3:46016464-46120400	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv1805205	chr3:46032847-46111081	Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46037600-46053000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:46037600-46064600	Weak transcription	Gastric	stomach
3	chr3:46038000-46041800	Weak transcription	Brain Substantia Nigra	brain
4	chr3:46038200-46041800	Weak transcription	Brain Anterior Caudate	brain
5	chr3:46038200-46041800	Weak transcription	Brain Hippocampus Middle	brain
6	chr3:46038200-46041800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr3:46038200-46042200	Weak transcription	Brain Angular Gyrus	brain
8	chr3:46038200-46047400	Weak transcription	Psoas Muscle	Psoas
9	chr3:46040200-46041400	Enhancers	Fetal Thymus	thymus
10	chr3:46040600-46041400	Enhancers	H9 Cell Line	embryonic stem cell
11	chr3:46041000-46041400	Enhancers	Thymus	Thymus

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