Variant report

Variant	rs9882765
Chromosome Location	chr3:46104530-46104531
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:46100682..46102669-chr3:46103976..46105710,2	K562	blood:
2	chr3:46103249..46106082-chr3:46119956..46121890,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12330199	1.00[EUR][1000 genomes]
rs13315494	1.00[EUR][1000 genomes]
rs13316935	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13317076	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2234359	1.00[EUR][1000 genomes]
rs28670183	1.00[EUR][1000 genomes]
rs41395345	1.00[EUR][1000 genomes]
rs56062522	1.00[EUR][1000 genomes]
rs57509359	1.00[EUR][1000 genomes]
rs58966767	1.00[EUR][1000 genomes]
rs60350631	1.00[EUR][1000 genomes]
rs6770833	1.00[EUR][1000 genomes]
rs6774011	1.00[EUR][1000 genomes]
rs6798819	1.00[EUR][1000 genomes]
rs73830784	1.00[EUR][1000 genomes]
rs7613756	1.00[EUR][1000 genomes]
rs7626225	1.00[EUR][1000 genomes]
rs7637926	1.00[EUR][1000 genomes]
rs7640708	1.00[EUR][1000 genomes]
rs9311389	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9811093	1.00[EUR][1000 genomes]
rs9814852	1.00[EUR][1000 genomes]
rs9824752	1.00[EUR][1000 genomes]
rs9825221	1.00[EUR][1000 genomes]
rs9831791	1.00[EUR][1000 genomes]
rs9833683	1.00[EUR][1000 genomes]
rs9835366	1.00[EUR][1000 genomes]
rs9838832	1.00[EUR][1000 genomes]
rs9841919	1.00[EUR][1000 genomes]
rs9856418	1.00[EUR][1000 genomes]
rs9858301	1.00[EUR][1000 genomes]
rs9859087	1.00[EUR][1000 genomes]
rs9870657	1.00[EUR][1000 genomes]
rs9875356	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	esv2756987	chr3:46016464-46120400	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv2759145	chr3:46016464-46120400	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv1805205	chr3:46032847-46111081	Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46096400-46106200	Weak transcription	Lung	lung
2	chr3:46099000-46105400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr3:46101000-46106400	Weak transcription	Primary B cells from cord blood	blood
4	chr3:46101600-46107000	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr3:46102200-46105200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:46102400-46105200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:46102600-46105600	Enhancers	Adipose Nuclei	Adipose
8	chr3:46102800-46105200	Enhancers	Aorta	Aorta
9	chr3:46103400-46105200	Enhancers	Left Ventricle	heart
10	chr3:46103400-46113600	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr3:46103600-46105000	Enhancers	Right Ventricle	heart
12	chr3:46103600-46105400	Enhancers	Ovary	ovary
13	chr3:46103600-46107000	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr3:46103800-46105000	Enhancers	Psoas Muscle	Psoas
15	chr3:46103800-46105200	Enhancers	Fetal Heart	heart
16	chr3:46103800-46106000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr3:46103800-46106800	Enhancers	GM12878-XiMat	blood
18	chr3:46103800-46113200	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr3:46103800-46114200	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr3:46104000-46104600	Enhancers	Brain Angular Gyrus	brain
21	chr3:46104000-46104800	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr3:46104000-46105000	Enhancers	Colon Smooth Muscle	Colon
23	chr3:46104000-46105000	Enhancers	Stomach Smooth Muscle	stomach
24	chr3:46104000-46113400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
25	chr3:46104200-46104600	Enhancers	HSMMtube	muscle
26	chr3:46104200-46104800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr3:46104200-46104800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr3:46104200-46104800	Enhancers	Rectal Smooth Muscle	rectum
29	chr3:46104200-46104800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
30	chr3:46104200-46105000	Enhancers	Primary hematopoietic stem cells short term culture	blood
31	chr3:46104200-46108400	Enhancers	Fetal Thymus	thymus
32	chr3:46104200-46110000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
33	chr3:46104200-46110200	Enhancers	Primary T cells fromperipheralblood	blood
34	chr3:46104200-46113600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
35	chr3:46104400-46104600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr3:46104400-46104600	Bivalent/Poised TSS	Osteobl	bone
37	chr3:46104400-46104800	Weak transcription	Spleen	Spleen
38	chr3:46104400-46105400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr3:46104400-46105800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr3:46104400-46106000	Weak transcription	Right Atrium	heart
41	chr3:46104400-46111800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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