Variant report

Variant	rs11575818
Chromosome Location	chr3:46419634-46419635
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11574431	1.00[EUR][1000 genomes]
rs11574437	1.00[EUR][1000 genomes]
rs11574440	1.00[EUR][1000 genomes]
rs11574441	1.00[EUR][1000 genomes]
rs11575814	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11575817	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11575820	1.00[AMR][1000 genomes]
rs11575822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13327723	1.00[EUR][1000 genomes]
rs17141003	1.00[EUR][1000 genomes]
rs17141076	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17842821	1.00[EUR][1000 genomes]
rs17842822	1.00[EUR][1000 genomes]
rs2373253	1.00[EUR][1000 genomes]
rs3136536	1.00[EUR][1000 genomes]
rs3176763	1.00[GIH][hapmap];0.89[LWK][hapmap];0.86[MKK][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3181037	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35212534	1.00[EUR][1000 genomes]
rs3918370	1.00[GIH][hapmap];0.91[LWK][hapmap];1.00[EUR][1000 genomes]
rs3918385	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs41395345	1.00[EUR][1000 genomes]
rs41495153	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs55951695	1.00[EUR][1000 genomes]
rs56062522	1.00[EUR][1000 genomes]
rs5742906	1.00[GIH][hapmap]
rs57509359	1.00[EUR][1000 genomes]
rs57761566	1.00[EUR][1000 genomes]
rs58966767	1.00[EUR][1000 genomes]
rs59998539	1.00[EUR][1000 genomes]
rs60350631	1.00[EUR][1000 genomes]
rs61737000	1.00[EUR][1000 genomes]
rs6441969	1.00[EUR][1000 genomes]
rs6770833	1.00[EUR][1000 genomes]
rs6798819	1.00[EUR][1000 genomes]
rs6801203	1.00[EUR][1000 genomes]
rs723577	1.00[EUR][1000 genomes]
rs73830784	1.00[EUR][1000 genomes]
rs73831107	1.00[EUR][1000 genomes]
rs7611447	1.00[EUR][1000 genomes]
rs7614209	1.00[EUR][1000 genomes]
rs7638702	1.00[EUR][1000 genomes]
rs7640084	1.00[EUR][1000 genomes]
rs7640708	1.00[EUR][1000 genomes]
rs7650273	1.00[EUR][1000 genomes]
rs7652954	1.00[GIH][hapmap];0.91[LWK][hapmap];0.84[MKK][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9282632	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv3323840	chr3:46352348-46497196	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3389382	chr3:46352798-46496696	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2756988	chr3:46419634-46444794	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2759146	chr3:46419634-46444794	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46396000-46422000	Weak transcription	Lung	lung
2	chr3:46404400-46422200	Weak transcription	Thymus	Thymus
3	chr3:46404400-46424600	Weak transcription	Spleen	Spleen
4	chr3:46410200-46420000	Weak transcription	Primary B cells from cord blood	blood
5	chr3:46411400-46422000	Weak transcription	Small Intestine	intestine
6	chr3:46414800-46422000	Weak transcription	Esophagus	oesophagus
7	chr3:46417000-46419800	Weak transcription	Duodenum Mucosa	Duodenum
8	chr3:46417000-46422200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr3:46417200-46421600	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr3:46417400-46421600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr3:46417400-46422000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr3:46417600-46420000	Weak transcription	Primary B cells from peripheral blood	blood
13	chr3:46417600-46421600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr3:46417600-46421800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr3:46417600-46422000	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr3:46417600-46422000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr3:46417600-46422000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr3:46417600-46422000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr3:46417600-46422000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr3:46417800-46421600	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr3:46417800-46421600	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr3:46418000-46422000	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr3:46418400-46420000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr3:46418400-46421600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr3:46418400-46421600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr3:46418400-46421800	Weak transcription	Primary T cells from cord blood	blood
27	chr3:46418400-46421800	Weak transcription	Primary hematopoietic stem cells	blood
28	chr3:46418400-46422000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr3:46418400-46422000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr3:46418600-46420000	Weak transcription	Dnd41	blood
31	chr3:46418600-46421600	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr3:46418600-46421600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr3:46418800-46420000	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr3:46418800-46420000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr3:46418800-46420000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr3:46418800-46420000	Weak transcription	Fetal Thymus	thymus
37	chr3:46419200-46420200	Weak transcription	Brain Hippocampus Middle	brain
38	chr3:46419400-46420000	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr3:46419600-46420000	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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