Variant report

Variant	rs9282632
Chromosome Location	chr3:46412708-46412709
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFIC	chr3:46412153-46412810	GM12878	blood:	n/a	n/a
2	GATA3	chr3:46412338-46412917	T-47D	breast:	n/a	chr3:46412610-46412617 chr3:46412610-46412620

Variant related genes	Relation type
CCR5	TF binding region

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11574431	1.00[EUR][1000 genomes]
rs11574437	1.00[EUR][1000 genomes]
rs11574440	1.00[EUR][1000 genomes]
rs11574441	1.00[EUR][1000 genomes]
rs11575814	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11575817	1.00[EUR][1000 genomes]
rs11575818	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11575822	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13327723	1.00[EUR][1000 genomes]
rs17141003	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17141076	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17842821	1.00[EUR][1000 genomes]
rs17842822	1.00[EUR][1000 genomes]
rs2373253	1.00[EUR][1000 genomes]
rs3136536	1.00[EUR][1000 genomes]
rs3176763	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3181037	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35212534	1.00[EUR][1000 genomes]
rs3918370	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs41395345	1.00[EUR][1000 genomes]
rs41495153	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55951695	1.00[EUR][1000 genomes]
rs56062522	1.00[EUR][1000 genomes]
rs57509359	1.00[EUR][1000 genomes]
rs57761566	1.00[EUR][1000 genomes]
rs58966767	1.00[EUR][1000 genomes]
rs59998539	1.00[EUR][1000 genomes]
rs60350631	1.00[EUR][1000 genomes]
rs61737000	1.00[EUR][1000 genomes]
rs6441969	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6770833	1.00[EUR][1000 genomes]
rs6776013	1.00[AMR][1000 genomes]
rs6798819	1.00[EUR][1000 genomes]
rs6801203	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs723577	1.00[EUR][1000 genomes]
rs73830784	1.00[EUR][1000 genomes]
rs73831107	1.00[EUR][1000 genomes]
rs7611447	1.00[EUR][1000 genomes]
rs7614209	1.00[EUR][1000 genomes]
rs7638702	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7640084	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7640708	1.00[EUR][1000 genomes]
rs7650273	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7652954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv3323840	chr3:46352348-46497196	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3389382	chr3:46352798-46496696	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46396000-46422000	Weak transcription	Lung	lung
2	chr3:46404400-46422200	Weak transcription	Thymus	Thymus
3	chr3:46404400-46424600	Weak transcription	Spleen	Spleen
4	chr3:46409200-46413200	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr3:46409400-46414200	Enhancers	Fetal Thymus	thymus
6	chr3:46409400-46418600	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr3:46409600-46412800	Enhancers	Primary T cells from cord blood	blood
8	chr3:46409600-46417200	Enhancers	Dnd41	blood
9	chr3:46410000-46413200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr3:46410000-46414000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:46410200-46420000	Weak transcription	Primary B cells from cord blood	blood
12	chr3:46411000-46412800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr3:46411200-46413200	Enhancers	Primary hematopoietic stem cells	blood
14	chr3:46411200-46413200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr3:46411400-46413000	Weak transcription	Placenta	Placenta
16	chr3:46411400-46416800	Weak transcription	Primary B cells from peripheral blood	blood
17	chr3:46411400-46422000	Weak transcription	Small Intestine	intestine
18	chr3:46411600-46413000	Enhancers	GM12878-XiMat	blood
19	chr3:46411600-46413600	Active TSS	Fetal Muscle Leg	muscle
20	chr3:46411800-46413200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
21	chr3:46412000-46412800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr3:46412000-46413000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
23	chr3:46412000-46413400	Enhancers	Primary T killer memory cells from peripheral blood	blood
24	chr3:46412000-46416600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr3:46412200-46413200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr3:46412200-46413400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
27	chr3:46412200-46413400	Active TSS	Primary T cells fromperipheralblood	blood
28	chr3:46412200-46414200	Active TSS	Duodenum Mucosa	Duodenum
29	chr3:46412200-46415400	Active TSS	Rectal Mucosa Donor 29	rectum
30	chr3:46412400-46413000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
31	chr3:46412400-46413600	Active TSS	Duodenum Smooth Muscle	Duodenum
32	chr3:46412400-46415000	Active TSS	Primary T helper naive cells from peripheral blood	blood
33	chr3:46412600-46413000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
34	chr3:46412600-46413200	Active TSS	Primary T regulatory cells fromperipheralblood	blood
35	chr3:46412600-46413200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr3:46412600-46413400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr3:46412600-46413400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr3:46412600-46413600	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
39	chr3:46412600-46413600	Weak transcription	Brain Hippocampus Middle	brain
40	chr3:46412600-46415400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr3:46412600-46416600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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