Variant report

Variant	rs57761566
Chromosome Location	chr3:46503792-46503793
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:46503439..46504291-chr3:46671319..46672034,3	K562	blood:
2	chr3:46501096..46502745-chr3:46502800..46504664,2	K562	blood:
3	chr3:46503615..46504280-chr3:46671186..46672162,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11574431	1.00[EUR][1000 genomes]
rs11574437	1.00[EUR][1000 genomes]
rs11574440	1.00[EUR][1000 genomes]
rs11574441	1.00[EUR][1000 genomes]
rs11575814	1.00[EUR][1000 genomes]
rs11575817	1.00[EUR][1000 genomes]
rs11575818	1.00[EUR][1000 genomes]
rs11575822	1.00[EUR][1000 genomes]
rs13327723	1.00[EUR][1000 genomes]
rs17079122	1.00[AMR][1000 genomes]
rs17141003	1.00[EUR][1000 genomes]
rs17141076	1.00[EUR][1000 genomes]
rs17842821	1.00[EUR][1000 genomes]
rs17842822	1.00[EUR][1000 genomes]
rs2373253	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3136536	1.00[EUR][1000 genomes]
rs3176763	1.00[EUR][1000 genomes]
rs3181037	1.00[EUR][1000 genomes]
rs35212534	1.00[EUR][1000 genomes]
rs3918370	1.00[EUR][1000 genomes]
rs41495153	1.00[EUR][1000 genomes]
rs55951695	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57600543	1.00[AMR][1000 genomes]
rs58966767	1.00[EUR][1000 genomes]
rs59998539	1.00[EUR][1000 genomes]
rs61737000	1.00[EUR][1000 genomes]
rs6441969	1.00[EUR][1000 genomes]
rs6773827	1.00[AMR][1000 genomes]
rs6785033	1.00[AMR][1000 genomes]
rs6798819	1.00[EUR][1000 genomes]
rs6801203	1.00[EUR][1000 genomes]
rs723577	1.00[EUR][1000 genomes]
rs73831107	1.00[EUR][1000 genomes]
rs73831148	1.00[AMR][1000 genomes]
rs73831153	1.00[AMR][1000 genomes]
rs73831154	1.00[AMR][1000 genomes]
rs73831162	1.00[AMR][1000 genomes]
rs7611447	1.00[EUR][1000 genomes]
rs7614209	1.00[EUR][1000 genomes]
rs7632722	1.00[AMR][1000 genomes]
rs7638702	1.00[EUR][1000 genomes]
rs7640084	1.00[EUR][1000 genomes]
rs7650273	1.00[EUR][1000 genomes]
rs7652954	1.00[EUR][1000 genomes]
rs9282632	1.00[EUR][1000 genomes]
rs9815029	1.00[AMR][1000 genomes]
rs9819415	1.00[AMR][1000 genomes]
rs9845343	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014624	chr3:46463424-46549188	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv1013306	chr3:46469014-46698538	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1009892	chr3:46496775-46546918	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	nsv536553	chr3:46496775-46546918	Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46480200-46504000	Weak transcription	Lung	lung
2	chr3:46489400-46504000	Weak transcription	Right Atrium	heart
3	chr3:46497800-46504000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr3:46498000-46504800	Weak transcription	Pancreas	Pancrea
5	chr3:46500000-46503800	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr3:46501400-46504000	Weak transcription	Left Ventricle	heart
7	chr3:46503200-46504200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr3:46503200-46504800	Enhancers	Primary B cells from cord blood	blood
9	chr3:46503400-46504000	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr3:46503400-46504000	Enhancers	Adipose Nuclei	Adipose
11	chr3:46503400-46504400	Enhancers	Spleen	Spleen
12	chr3:46503600-46504200	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr3:46503600-46504200	Enhancers	Fetal Intestine Large	intestine
14	chr3:46503600-46504200	Enhancers	Fetal Intestine Small	intestine
15	chr3:46503600-46504400	Enhancers	Gastric	stomach

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