Variant report

Variant	rs17842822
Chromosome Location	chr3:46436556-46436557
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:46435557..46438302-chr3:46445017..46447658,3	MCF-7	breast:
2	chr3:46436463..46438554-chr3:46441253..46442786,2	K562	blood:
3	chr3:46428873..46431436-chr3:46435878..46437838,2	K562	blood:
4	chr3:46435342..46437357-chr3:46438783..46441176,2	K562	blood:
5	chr3:46434903..46437048-chr3:46441452..46445081,4	K562	blood:
6	chr3:46428873..46431704-chr3:46436211..46437838,2	K562	blood:
7	chr3:46436315..46436954-chr3:46671328..46672082,2	K562	blood:
8	chr3:46436362..46436961-chr3:46468661..46469389,2	MCF-7	breast:

No data

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11574431	1.00[EUR][1000 genomes]
rs11574437	1.00[EUR][1000 genomes]
rs11574440	1.00[EUR][1000 genomes]
rs11574441	1.00[EUR][1000 genomes]
rs11575814	1.00[EUR][1000 genomes]
rs11575817	1.00[EUR][1000 genomes]
rs11575818	1.00[EUR][1000 genomes]
rs11575822	1.00[EUR][1000 genomes]
rs13327723	1.00[EUR][1000 genomes]
rs17141003	1.00[EUR][1000 genomes]
rs17141076	1.00[EUR][1000 genomes]
rs17842821	1.00[EUR][1000 genomes]
rs2373253	1.00[EUR][1000 genomes]
rs3136536	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3176763	1.00[EUR][1000 genomes]
rs3181037	1.00[EUR][1000 genomes]
rs35212534	1.00[EUR][1000 genomes]
rs3918370	1.00[EUR][1000 genomes]
rs41495153	1.00[EUR][1000 genomes]
rs55951695	1.00[EUR][1000 genomes]
rs56062522	1.00[EUR][1000 genomes]
rs57509359	1.00[EUR][1000 genomes]
rs57761566	1.00[EUR][1000 genomes]
rs58966767	1.00[EUR][1000 genomes]
rs59998539	1.00[EUR][1000 genomes]
rs60350631	1.00[EUR][1000 genomes]
rs61737000	1.00[EUR][1000 genomes]
rs6441969	1.00[EUR][1000 genomes]
rs6770833	1.00[EUR][1000 genomes]
rs6798819	1.00[EUR][1000 genomes]
rs6801203	1.00[EUR][1000 genomes]
rs723577	1.00[EUR][1000 genomes]
rs73830784	1.00[EUR][1000 genomes]
rs73831107	1.00[EUR][1000 genomes]
rs7611447	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7614209	1.00[EUR][1000 genomes]
rs7638702	1.00[EUR][1000 genomes]
rs7640084	1.00[EUR][1000 genomes]
rs7640708	1.00[EUR][1000 genomes]
rs7650273	1.00[EUR][1000 genomes]
rs7652954	1.00[EUR][1000 genomes]
rs9282632	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv3323840	chr3:46352348-46497196	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3389382	chr3:46352798-46496696	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2756988	chr3:46419634-46444794	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2759146	chr3:46419634-46444794	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv10267	chr3:46423130-46440713	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46422400-46438600	Weak transcription	Psoas Muscle	Psoas
2	chr3:46425400-46441800	Weak transcription	Stomach Mucosa	stomach
3	chr3:46425800-46446600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr3:46428000-46448400	Weak transcription	Primary T cells from cord blood	blood
5	chr3:46432400-46438200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr3:46432600-46437400	Enhancers	Placenta	Placenta
7	chr3:46433400-46437000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr3:46433600-46436800	Enhancers	Dnd41	blood
9	chr3:46434000-46436600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr3:46434200-46437800	Enhancers	Fetal Intestine Large	intestine
11	chr3:46434400-46437200	Enhancers	Hela-S3	cervix
12	chr3:46434400-46438200	Enhancers	Adipose Nuclei	Adipose
13	chr3:46434600-46437600	Enhancers	Fetal Intestine Small	intestine
14	chr3:46434600-46438000	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr3:46434600-46438600	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr3:46435200-46439000	Enhancers	Spleen	Spleen
17	chr3:46435400-46436600	Weak transcription	HMEC	breast
18	chr3:46435400-46436800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr3:46435400-46437400	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr3:46435400-46438000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr3:46435400-46440800	Weak transcription	Esophagus	oesophagus
22	chr3:46435600-46437400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr3:46435600-46437400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr3:46435600-46437400	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr3:46435600-46439200	Enhancers	Lung	lung
26	chr3:46435800-46438200	Weak transcription	Right Atrium	heart
27	chr3:46436000-46437200	Weak transcription	Brain Anterior Caudate	brain
28	chr3:46436000-46438400	Weak transcription	Left Ventricle	heart
29	chr3:46436200-46436600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr3:46436400-46437200	Enhancers	K562	blood
31	chr3:46436400-46438800	Enhancers	Primary monocytes fromperipheralblood	blood

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