Variant report

Variant	rs73830722
Chromosome Location	chr3:46105708-46105709
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:46100682..46102669-chr3:46103976..46105710,2	K562	blood:
2	chr3:46103249..46106082-chr3:46119956..46121890,2	K562	blood:
3	chr3:46096990..46098944-chr3:46105207..46107426,2	K562	blood:
4	chr3:46104564..46106749-chr3:46109061..46111797,3	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1500006	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17078579	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41395345	1.00[AMR][1000 genomes]
rs57509359	1.00[AMR][1000 genomes]
rs57857531	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58692140	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59253523	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59862185	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60829665	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60854606	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830725	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830726	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830728	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830733	0.83[AFR][1000 genomes]
rs73830737	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830745	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830751	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830752	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830755	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830784	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	esv2756987	chr3:46016464-46120400	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv2759145	chr3:46016464-46120400	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv1805205	chr3:46032847-46111081	Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46096400-46106200	Weak transcription	Lung	lung
2	chr3:46101000-46106400	Weak transcription	Primary B cells from cord blood	blood
3	chr3:46101600-46107000	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr3:46103400-46113600	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr3:46103600-46107000	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr3:46103800-46106000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr3:46103800-46106800	Enhancers	GM12878-XiMat	blood
8	chr3:46103800-46113200	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr3:46103800-46114200	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr3:46104000-46113400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr3:46104200-46108400	Enhancers	Fetal Thymus	thymus
12	chr3:46104200-46110000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr3:46104200-46110200	Enhancers	Primary T cells fromperipheralblood	blood
14	chr3:46104200-46113600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr3:46104400-46105800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr3:46104400-46106000	Weak transcription	Right Atrium	heart
17	chr3:46104400-46111800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr3:46104600-46114000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr3:46104800-46107000	Enhancers	Primary T killer memory cells from peripheral blood	blood
20	chr3:46104800-46109200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr3:46105000-46106200	Weak transcription	Right Ventricle	heart
22	chr3:46105000-46106600	Enhancers	Primary T cells from cord blood	blood
23	chr3:46105000-46107000	Weak transcription	Psoas Muscle	Psoas
24	chr3:46105000-46108600	Weak transcription	Spleen	Spleen
25	chr3:46105000-46109800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr3:46105200-46106000	Weak transcription	Esophagus	oesophagus
27	chr3:46105200-46106800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr3:46105200-46107000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr3:46105200-46107000	Weak transcription	Left Ventricle	heart
30	chr3:46105200-46108600	Weak transcription	Aorta	Aorta
31	chr3:46105200-46111000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
32	chr3:46105400-46106000	Weak transcription	Ovary	ovary
33	chr3:46105400-46111000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr3:46105600-46107200	Weak transcription	Adipose Nuclei	Adipose
35	chr3:46105600-46107600	Enhancers	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links